SMTL ID : 4b1i.1

Structure of human PARG catalytic domain in complex with OA-ADP-HPD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.14 Å

Oligo State

monomer

Ligands

2 x DTV: (2S,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL(Non-covalent)

DTV.1: 2 residues within 4Å: Chain A: C.158, N.161 No protein-ligand interaction detected (PLIP) DTV.2: 4 residues within 4Å: Chain A: P.261, C.266, K.268, A.447 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.447 Water bridges: A:E.262, A:K.268, A:Y.404

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: F.131, L.136, E.140, H.143, I.148, K.232, F.235 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.232

1 x A8P: 8-n-octylamino-adenosine diphosphate hydroxypyrrolidinediol(Non-covalent)

A8P.4: 20 residues within 4Å: Chain A: T.280, I.281, E.282, F.293, A.294, N.295, G.300, V.308, Q.309, E.310, E.311, Y.347, Y.350, N.424, G.426, C.427, G.428, A.429, F.430, F.457 26 PLIP interactions: 26 interactions with chain A Hydrophobic interactions: A:V.308, A:Y.350, A:Y.350, A:F.457, A:F.457 Hydrogen bonds: A:I.281, A:E.282, A:N.295, A:N.295, A:Q.309, A:E.310, A:Y.347, A:N.424, A:G.426, A:G.428, A:A.429, A:F.430 Water bridges: A:F.293, A:G.301, A:Q.309, A:E.310, A:N.424, A:N.424, A:T.456, A:F.457 pi-Stacking: A:F.457

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 5 residues within 4Å: Chain A: R.90, Y.119, P.198, R.199, N.201 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.199, A:R.199, A:N.201 Water bridges: A:R.199, A:R.199, A:N.201 Salt bridges: A:R.90 SO4.6: 3 residues within 4Å: Chain A: W.61, K.67, R.199 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.61 Salt bridges: A:R.199 SO4.7: 3 residues within 4Å: Chain A: K.205, S.206, E.207 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.206, A:E.207 Water bridges: A:R.199, A:R.199

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tucker, J.A. et al., Structures of the Human Poly (Adp-Ribose) Glycohydrolase Catalytic Domain Confirm Catalytic Mechanism and Explain Inhibition by Adp-Hpd Derivatives. Plos One (2012)

Release Date

2012-12-19

Peptides

POLY(ADP-RIBOSE) GLYCOHYDROLASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

POLY(ADP-RIBOSE) GLYCOHYDROLASE

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