SMTL ID : 4b1j.1

Structure of human PARG catalytic domain in complex with ADP-HPD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.08 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: F.131, L.136, E.140, H.143, L.144, I.148, K.232, F.235 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.140, A:L.144 Water bridges: A:K.232 GOL.2: 5 residues within 4Å: Chain A: I.39, R.40, V.41, D.42, F.53 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.39, A:V.41 Water bridges: A:R.40, A:D.42

1 x A1R: 5'-O-[(S)-{[(S)-{[(2R,3R,4S)-3,4-DIHYDROXYPYRROLIDIN-2-YL]METHOXY}(HYDROXY)PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]ADENOSINE(Non-covalent)

A1R.3: 20 residues within 4Å: Chain A: T.280, I.281, E.282, F.293, A.294, N.295, G.300, V.308, Q.309, E.310, E.311, Y.347, Y.350, N.424, G.426, C.427, G.428, A.429, F.430, F.457 23 PLIP interactions: 23 interactions with chain A Hydrogen bonds: A:I.281, A:E.282, A:N.295, A:N.295, A:Q.309, A:E.310, A:Y.347, A:Y.350, A:Y.350, A:N.424, A:G.426, A:G.428, A:A.429, A:F.430 Water bridges: A:G.301, A:Q.309, A:E.310, A:E.311, A:E.311, A:N.424, A:T.456, A:F.457 pi-Stacking: A:F.457

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 2 residues within 4Å: Chain A: R.496, N.497 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.497 Salt bridges: A:R.496 SO4.5: 3 residues within 4Å: Chain A: W.61, K.67, R.199 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.61 Water bridges: A:K.67 Salt bridges: A:R.199 SO4.6: 4 residues within 4Å: Chain A: R.199, K.205, S.206, E.207 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.206, A:E.207 Water bridges: A:R.199, A:Y.208

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tucker, J.A. et al., Structures of the Human Poly (Adp-Ribose) Glycohydrolase Catalytic Domain Confirm Catalytic Mechanism and Explain Inhibition by Adp-Hpd Derivatives. Plos One (2012)

Release Date

2012-12-19

Peptides

POLY(ADP-RIBOSE) GLYCOHYDROLASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

POLY(ADP-RIBOSE) GLYCOHYDROLASE

Related Entries With Identical Sequence