SMTL ID : 7kfp.1

Structure of human PARG complexed with PARG-119

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x WD7: N-{[2-(1,3-dimethyl-2-oxo-6-sulfanylidene-1,2,3,6-tetrahydro-7H-purin-7-yl)ethyl]carbamoyl}methanesulfonamide(Non-covalent)

WD7.1: 18 residues within 4Å: Chain A: T.280, I.281, E.282, F.293, V.308, Q.309, I.312, Y.347, Y.350, G.423, N.424, W.425, G.426, C.427, G.428, A.429, F.455, F.457 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:I.281, A:Q.309, A:C.427, A:A.429 Water bridges: A:Q.309 pi-Stacking: A:F.457, A:F.457

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 9 residues within 4Å: Chain A: E.282, E.283, Q.286, Q.343, H.360, E.361, D.362, G.363, S.364 2 PLIP interactions: 2 interactions with chain A Water bridges: A:S.364 Salt bridges: A:D.362

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: I.148, K.232, F.235, C.236, R.239, W.356, S.359 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.232 Water bridges: A:S.359

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 8 residues within 4Å: Chain A: Y.76, R.90, L.93, K.114, Y.115, N.116, V.117, A.118 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.117 Water bridges: A:R.90, A:A.118 Salt bridges: A:R.90 SO4.5: 7 residues within 4Å: Chain A: P.27, L.28, L.29, V.41, L.44, D.368, W.369 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.29, A:W.369 SO4.6: 8 residues within 4Å: Chain A: E.264, R.265, C.266, E.267, T.479, G.481, D.482, K.485 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.264, A:T.479 Water bridges: A:K.485 Salt bridges: A:K.485 SO4.7: 4 residues within 4Å: Chain A: Y.57, C.70, W.91, P.160 2 PLIP interactions: 2 interactions with chain A Water bridges: A:E.72, A:W.91 SO4.8: 7 residues within 4Å: Chain A: P.31, V.37, I.39, R.40, V.41, D.42, F.53 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.41 Water bridges: A:Q.165

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brosey, C.A. et al., Targeting SARS-CoV-2 Nsp3 macrodomain structure with insights from human poly(ADP-ribose) glycohydrolase (PARG) structures with inhibitors. Prog.Biophys.Mol.Biol. (2021)

Release Date

2021-03-10

Peptides

Poly(ADP-ribose) glycohydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Poly(ADP-ribose) glycohydrolase

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