SMTL ID : 6hmk.1

POLYADPRIBOSYL GLYCOHYDROLASE IN COMPLEX WITH PDD00016690

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.06 Å

Oligo State

monomer

Ligands

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 7 residues within 4Å: Chain A: Y.76, R.90, L.93, K.114, Y.115, N.116, V.117 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.90, A:V.117 DMS.2: 6 residues within 4Å: Chain A: P.27, L.28, L.29, L.44, D.368, W.369 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.29

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: P.31, V.37, I.39, R.40, V.41, F.53 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.37, A:V.41, A:D.42 Water bridges: A:Q.165

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 1 residues within 4Å: Chain A: R.496 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.496 SO4.5: 3 residues within 4Å: Chain A: W.61, K.67, R.199 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.61 Water bridges: A:K.67 Salt bridges: A:K.67, A:R.199 SO4.6: 5 residues within 4Å: Chain A: R.90, Y.119, P.198, R.199, N.201 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.199, A:N.201 Water bridges: A:R.199, A:N.201 Salt bridges: A:R.90, A:R.199 SO4.7: 2 residues within 4Å: Chain A: P.393, R.397 3 PLIP interactions: 3 interactions with chain A Water bridges: A:E.394, A:R.397 Salt bridges: A:R.397

1 x 7JC: 1-methyl-~{N}-(1-methylcyclopropyl)-3-[(2-methyl-1,3-thiazol-5-yl)methyl]-2,4-bis(oxidanylidene)quinazoline-6-sulfonamide(Non-covalent)

7JC.8: 15 residues within 4Å: Chain A: T.280, I.281, E.282, F.293, Q.309, I.312, R.313, I.316, Y.347, Y.350, N.424, C.427, T.456, F.457, D.459 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:R.313, A:F.457, A:D.459 Hydrogen bonds: A:I.281, A:E.282, A:Q.309, A:N.424 pi-Stacking: A:Y.350, A:F.457, A:F.457

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Waszkowycz, B. et al., Cell-Active Small Molecule Inhibitors of the DNA-Damage Repair Enzyme Poly(ADP-ribose) Glycohydrolase (PARG): Discovery and Optimization of Orally Bioavailable Quinazolinedione Sulfonamides. J.Med.Chem. (2018)

Release Date

2018-11-14

Peptides

Poly(ADP-ribose) glycohydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Poly(ADP-ribose) glycohydrolase

Related Entries With Identical Sequence