SMTL ID : 4b3h.1

Crystal structure of Mycobacterium tuberculosis fatty acid beta- oxidation complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-2-2-mer

Ligands

30 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: P.275, G.309, Q.310, V.311 Ligand excluded by PLIP SO4.2: 5 residues within 4Å: Chain A: Q.289, V.290, D.291 Chain C: H.24, S.123 Ligand excluded by PLIP SO4.3: 4 residues within 4Å: Chain A: H.7, H.8, H.9, H.10 Ligand excluded by PLIP SO4.4: 4 residues within 4Å: Chain A: R.614, G.626, K.627, R.628 Ligand excluded by PLIP SO4.5: 3 residues within 4Å: Chain A: P.647, L.648 Chain D: H.243 Ligand excluded by PLIP SO4.6: 1 residues within 4Å: Chain A: R.343 Ligand excluded by PLIP SO4.7: 2 residues within 4Å: Chain A: S.674, T.675 Ligand excluded by PLIP SO4.12: 4 residues within 4Å: Chain B: P.275, G.309, Q.310, V.311 Ligand excluded by PLIP SO4.13: 4 residues within 4Å: Chain B: Q.289, V.290, D.291 Chain D: H.24 Ligand excluded by PLIP SO4.14: 3 residues within 4Å: Chain B: P.647, L.648 Chain C: H.243 Ligand excluded by PLIP SO4.15: 2 residues within 4Å: Chain B: R.343, K.419 Ligand excluded by PLIP SO4.16: 2 residues within 4Å: Chain B: R.614, R.628 Ligand excluded by PLIP SO4.17: 1 residues within 4Å: Chain B: K.616 Ligand excluded by PLIP SO4.18: 3 residues within 4Å: Chain B: G.709, K.710, A.711 Ligand excluded by PLIP SO4.19: 4 residues within 4Å: Chain B: T.673, S.674, T.675, A.676 Ligand excluded by PLIP SO4.20: 2 residues within 4Å: Chain B: P.236, K.239 Ligand excluded by PLIP SO4.24: 1 residues within 4Å: Chain C: R.382 Ligand excluded by PLIP SO4.25: 4 residues within 4Å: Chain C: S.163, R.164, N.249, V.251 Ligand excluded by PLIP SO4.26: 1 residues within 4Å: Chain C: R.195 Ligand excluded by PLIP SO4.27: 2 residues within 4Å: Chain C: P.193, R.195 Ligand excluded by PLIP SO4.28: 6 residues within 4Å: Chain C: R.42, H.43, P.44, D.45, L.46, Q.278 Ligand excluded by PLIP SO4.29: 4 residues within 4Å: Chain C: R.173, K.177, D.345, E.346 Ligand excluded by PLIP SO4.30: 3 residues within 4Å: Chain C: N.380, R.382, R.402 Ligand excluded by PLIP SO4.31: 6 residues within 4Å: Chain B: K.267 Chain C: G.232, G.233, F.234, D.235, D.236 Ligand excluded by PLIP SO4.33: 3 residues within 4Å: Chain D: R.382, R.402 Ligands: SO4.38 Ligand excluded by PLIP SO4.34: 2 residues within 4Å: Chain D: R.195, L.201 Ligand excluded by PLIP SO4.35: 2 residues within 4Å: Chain D: P.193, R.195 Ligand excluded by PLIP SO4.36: 4 residues within 4Å: Chain D: S.163, R.164, N.249, V.251 Ligand excluded by PLIP SO4.37: 6 residues within 4Å: Chain D: R.42, H.43, P.44, D.45, L.46, Q.278 Ligand excluded by PLIP SO4.38: 2 residues within 4Å: Chain D: R.382 Ligands: SO4.33 Ligand excluded by PLIP

9 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 3 residues within 4Å: Chain A: G.725, D.726, R.727 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.726, A:R.727, A:R.727 GOL.9: 8 residues within 4Å: Chain A: G.84, D.85, M.89, E.135, E.157, G.165, G.166, F.303 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.85, A:E.157, A:E.157, A:G.165, A:G.166 Water bridges: A:G.132 GOL.10: 6 residues within 4Å: Chain A: S.528, I.531, G.532, M.576, I.579 Ligands: GOL.11 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.528 Water bridges: A:L.571 GOL.11: 8 residues within 4Å: Chain A: S.457, F.480, T.527, S.528, I.531, L.571, I.686 Ligands: GOL.10 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.527 Water bridges: A:S.481 GOL.21: 8 residues within 4Å: Chain B: G.84, D.85, M.89, E.135, E.157, G.165, G.166, F.303 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:D.85, B:E.157, B:G.165, B:G.166 Water bridges: B:G.132 GOL.22: 7 residues within 4Å: Chain B: S.457, H.478, F.480, S.528, I.531, L.571, I.686 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.528 Water bridges: B:S.481 GOL.23: 2 residues within 4Å: Chain B: D.27, A.28 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:A.28 GOL.32: 9 residues within 4Å: Chain C: I.36, L.39, R.40, H.43, L.46, E.48, I.51, L.115, M.268 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:H.43, C:E.48 GOL.39: 8 residues within 4Å: Chain D: L.39, R.40, H.43, L.46, E.48, I.51, L.115, M.268 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:H.43, D:E.48

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Venkatesan, R. et al., Structure of Mycobacterial Beta-Oxidation Trifunctional Enzyme Reveals its Altered Assembly and Putative Substrate Channeling Pathway. Acs Chem.Biol. (2013)

Release Date

2013-03-27

Peptides

FATTY ACID BETA-OXIDATION COMPLEX ALPHA-CHAIN FADB: AB
FATTY ACID BETA-OXIDATION COMPLEX BETA-CHAIN FADA: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

FATTY ACID BETA-OXIDATION COMPLEX ALPHA-CHAIN FADB

FATTY ACID BETA-OXIDATION COMPLEX BETA-CHAIN FADA

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