SMTL ID : 4cgo.1

Leishmania major N-myristoyltransferase in complex with a thienopyrimidine inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 7 residues within 4Å: Chain A: L.165, R.166, E.167, K.168, R.169, L.170 Ligands: MYA.2 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:L.165

1 x MYA: TETRADECANOYL-COA(Non-covalent)

MYA.2: 34 residues within 4Å: Chain A: H.2, A.3, F.4, W.5, N.69, Y.70, V.71, I.156, N.157, F.158, L.159, C.160, V.161, R.166, E.167, K.168, R.169, L.170, A.171, P.172, I.175, T.179, V.182, N.183, W.188, Q.189, A.190, Y.192, T.193, A.194, V.196, L.198, Y.394 Ligands: MG.1 41 PLIP interactions: 41 interactions with chain A Hydrophobic interactions: A:W.5, A:W.5, A:Y.70, A:V.71, A:I.156, A:L.159, A:L.159, A:L.159, A:V.161, A:I.175, A:I.175, A:V.182, A:A.190, A:Y.192, A:Y.192, A:Y.394 Hydrogen bonds: A:A.3, A:F.4, A:W.5, A:Y.70, A:F.158, A:L.159, A:L.159, A:V.161, A:R.166, A:E.167, A:R.169, A:L.170, A:A.171 Water bridges: A:H.2, A:H.2, A:E.167, A:R.169, A:R.169, A:R.169, A:R.169, A:R.169, A:R.169 Salt bridges: A:H.2, A:R.169, A:R.169

2 x 6KV: 3-[methyl-[2-[methyl-(1-methylpiperidin-4-yl)amino]thieno[3,2-d]pyrimidin-4-yl]amino]propanenitrile(Non-covalent)

6KV.3: 15 residues within 4Å: Chain A: V.71, F.80, Y.82, N.157, T.193, G.195, Y.207, H.209, I.318, Y.335, G.387, H.388, M.410, L.411 Ligands: 6KV.4 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.80 Hydrogen bonds: A:G.195, A:Y.335 Water bridges: A:N.157 6KV.4: 13 residues within 4Å: Chain A: V.71, E.72, D.73, F.78, F.80, F.222, S.320, L.331, A.333, Y.335, N.366, D.386 Ligands: 6KV.3 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:D.73, A:F.80 Hydrogen bonds: A:N.366 Salt bridges: A:D.386

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brannigan, J.A. et al., Diverse Modes of Binding in Structures of Leishmania Major N-Myristoyltransferase with Selective Inhibitors. Iucrj (2014)

Release Date

2014-07-09

Peptides

GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE

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