SMTL ID : 6gnt.1

Crystal Structure of Leishmania major N-Myristoyltransferase (NMT) With Bound Myristoyl-CoA and a Quionlinyl aryl sulphonamide ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x MYA: TETRADECANOYL-COA(Non-covalent)

MYA.1: 34 residues within 4Å: Chain A: H.2, A.3, F.4, W.5, N.69, Y.70, V.71, I.156, N.157, F.158, L.159, C.160, V.161, R.166, E.167, K.168, R.169, L.170, A.171, P.172, I.175, T.179, V.182, N.183, W.188, Q.189, A.190, Y.192, T.193, A.194, V.196, L.198, Y.394 Ligands: F5Q.3 37 PLIP interactions: 37 interactions with chain A Hydrophobic interactions: A:W.5, A:W.5, A:Y.70, A:V.71, A:I.156, A:I.156, A:L.159, A:L.159, A:V.161, A:I.175, A:I.175, A:V.182, A:A.190, A:Y.192, A:Y.192, A:Y.394, A:Y.394 Hydrogen bonds: A:A.3, A:F.4, A:W.5, A:Y.70, A:L.159, A:L.159, A:V.161, A:R.166, A:E.167, A:R.169, A:L.170, A:A.171 Water bridges: A:A.1, A:H.2, A:K.168, A:K.168, A:R.169 Salt bridges: A:H.2, A:R.169, A:R.169

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: V.121, E.155, F.282, Y.290, Y.338, L.408, V.409, M.410 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.155 Water bridges: A:Y.290, A:Y.290, A:L.411

1 x F5Q: 4-[4-(1-methylpiperidin-4-yl)butyl]-~{N}-(6-pyrrolidin-1-ylquinolin-5-yl)benzenesulfonamide(Non-covalent)

F5Q.3: 20 residues within 4Å: Chain A: Y.70, V.71, D.73, F.78, F.80, N.157, T.193, G.195, Y.207, H.209, S.320, L.331, N.366, G.385, D.386, G.387, L.389, M.410, L.411 Ligands: MYA.1 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:V.71, A:D.73, A:F.80, A:F.80, A:Y.207, A:Y.207, A:L.331, A:L.389 Hydrogen bonds: A:S.320, A:D.386, A:G.387 Water bridges: A:N.157, A:D.386 pi-Stacking: A:F.78

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Harrison, J.R. et al., A Molecular Hybridization Approach for the Design of Potent, Highly Selective, and Brain-Penetrant N-Myristoyltransferase Inhibitors. J. Med. Chem. (2018)

Release Date

2018-09-26

Peptides

Glycylpeptide N-tetradecanoyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycylpeptide N-tetradecanoyltransferase

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