SMTL ID : 4ctj.1 (1 other biounit)

DENGUE 3 NS5 METHYLTRANSFERASE BOUND TO S-ADENOSYL METHIONINE AND FRAGMENT 3A9

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.47 Å

Oligo State

monomer

Ligands

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1: 17 residues within 4Å: Chain A: S.56, G.58, G.81, C.82, G.83, G.85, G.86, W.87, T.104, K.105, H.110, K.130, D.131, V.132, F.133, D.146, I.147 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:S.56, A:C.82, A:G.85, A:G.86, A:W.87, A:T.104, A:K.105, A:H.110, A:E.111, A:D.131, A:V.132 Water bridges: A:D.79, A:G.81, A:R.84, A:S.88, A:G.109, A:G.148 Salt bridges: A:D.146 pi-Stacking: A:H.110

1 x 3A9: 2,3-DIHYDRO-1-BENZOFURAN-5-CARBOXYLIC ACID(Non-covalent)

3A9.2: 4 residues within 4Å: Chain A: L.237, R.241, M.244, R.247 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.247, A:R.247 Salt bridges: A:R.241, A:R.247

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 3 residues within 4Å: Chain A: G.109, H.110, E.111 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.109, A:E.111 Water bridges: A:G.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Coutard, B. et al., Assessment of Dengue Virus Helicase and Methyltransferase as Targets for Fragment-Based Drug Discovery. Antiviral Res. (2014)

Release Date

2014-04-16

Peptides

NON-STRUCTURAL PROTEIN 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NON-STRUCTURAL PROTEIN 5

Related Entries With Identical Sequence