SMTL ID : 5ehg.1 (1 other biounit)

DENGUE 3 NS5 METHYLTRANSFERASE BOUND TO S-ADENOSYL METHIONINE AND MOLECULE BF341

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

monomer

Ligands

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1: 18 residues within 4Å: Chain A: S.56, G.58, G.81, C.82, G.83, G.85, G.86, W.87, T.104, K.105, H.110, E.111, K.130, D.131, V.132, F.133, D.146, I.147 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:S.56, A:C.82, A:G.85, A:G.86, A:W.87, A:T.104, A:K.105, A:H.110, A:E.111, A:E.111, A:D.131, A:V.132 Water bridges: A:D.79, A:G.81, A:R.84, A:S.88, A:G.148 Salt bridges: A:E.111, A:D.146

1 x 5O0: 4-[3-[(2-azanyl-4-chloranyl-phenyl)carbamoylamino]phenyl]sulfonyloxybenzoic acid(Non-covalent)

5O0.2: 6 residues within 4Å: Chain A: G.107, P.108, G.109, H.110, E.111, E.112 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.107, A:G.109, A:H.110, A:E.112, A:E.112 Water bridges: A:H.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Benmansour, F. et al., Discovery of novel dengue virus NS5 methyltransferase non-nucleoside inhibitors by fragment-based drug design. Eur.J.Med.Chem. (2016)

Release Date

2016-10-26

Peptides

RNA-directed RNA polymerase NS5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA-directed RNA polymerase NS5

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