SMTL ID : 8bcr.2 (1 other biounit)

DENV3 Methyltransferase in complexed with AT-9010 and SAH

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x AT9: [[(2R,3R,4R,5R)-5-(2-azanyl-6-oxidanylidene-1H-purin-9-yl)-4-fluoranyl-4-methyl-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate(Non-covalent)

AT9.1: 10 residues within 4Å: Chain A: K.14, L.17, N.18, L.20, R.22, F.25, S.150, S.151, P.152, S.213 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:K.14, A:L.20, A:L.20, A:S.150, A:S.150, A:S.151, A:S.213 Water bridges: A:K.29, A:K.29 Salt bridges: A:K.29 pi-Stacking: A:F.25, A:F.25

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.2: 17 residues within 4Å: Chain A: S.56, G.58, G.81, C.82, G.83, G.86, W.87, T.104, K.105, H.110, E.111, K.130, D.131, V.132, F.133, D.146, I.147 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:S.56, A:C.82, A:G.85, A:G.86, A:W.87, A:W.87, A:T.104, A:K.105, A:H.110, A:E.111, A:E.111, A:E.111, A:D.131, A:D.131, A:V.132 Water bridges: A:R.84, A:S.88

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 3 residues within 4Å: Chain A: K.42, R.57, R.211 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.57 Salt bridges: A:K.42, A:R.57, A:R.211

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Feracci, M. et al., AT-752 targets multiple sites and activities on the Dengue virus replication enzyme NS5. Antiviral Res. (2023)

Release Date

2023-03-22

Peptides

Genome polyprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Genome polyprotein

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