SMTL ID : 4ctk.1 (1 other biounit)

DENGUE 3 NS5 METHYLTRANSFERASE BOUND TO S-ADENOSYL METHIONINE AND FRAGMENT 2A4

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.53 Å

Oligo State

monomer

Ligands

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1: 18 residues within 4Å: Chain A: S.56, G.58, G.81, C.82, G.83, G.85, G.86, W.87, T.104, K.105, H.110, E.111, K.130, D.131, V.132, F.133, D.146, I.147 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:S.56, A:C.82, A:G.85, A:G.86, A:W.87, A:T.104, A:K.105, A:H.110, A:E.111, A:E.111, A:D.131, A:V.132 Water bridges: A:D.79, A:G.81, A:R.84, A:S.88, A:G.148 Salt bridges: A:E.111, A:D.146

2 x SVN: thieno[2,3-b]pyrazin-7-amine(Non-covalent)

SVN.2: 6 residues within 4Å: Chain A: L.17, L.20, S.21, R.22, F.25 Ligands: SVN.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.20 pi-Stacking: A:F.25, A:F.25 SVN.4: 3 residues within 4Å: Chain A: N.18, P.152 Ligands: SVN.2 No protein-ligand interaction detected (PLIP)

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 2 residues within 4Å: Chain A: G.109, H.110 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.109 Water bridges: A:G.109

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.5: 5 residues within 4Å: Chain A: Y.28, R.241, F.242, M.244, H.246 1 PLIP interactions: 1 interactions with chain A Water bridges: A:S.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Coutard, B. et al., Assessment of Dengue Virus Helicase and Methyltransferase as Targets for Fragment-Based Drug Discovery. Antiviral Res. (2014)

Release Date

2014-04-16

Peptides

POLYPROTEIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

POLYPROTEIN

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