SMTL ID : 4cxw.1

Crystal structure of human FTO in complex with subfamily-selective inhibitor 12

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

monomer

Ligands

1 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 5 residues within 4Å: Chain A: H.221, D.223, H.297, R.312 Ligands: 6MK.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.221, A:D.223, A:H.297, H2O.2

1 x 6MK: (2E)-4-[N'-(4-benzyl-pyridine-3-carbonyl)-hydrazino]-4-oxo-but-2-enoic acid(Non-covalent)

6MK.2: 18 residues within 4Å: Chain A: R.86, Y.96, Y.98, L.193, V.218, H.221, H.222, D.223, E.224, V.234, Y.285, H.297, V.299, R.306, S.308, T.310, R.312 Ligands: NI.1 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:V.218, A:H.221, A:V.299, A:T.310 Hydrogen bonds: A:R.86, A:Y.96, A:E.224, A:S.308, A:R.312 Water bridges: A:R.312, A:R.312 Salt bridges: A:R.306 pi-Stacking: A:Y.98, A:H.221

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Toh, J.D.W. et al., A strategy based on nucleotide specificity leads to a subfamily-selective and cell-active inhibitor ofN6-methyladenosine demethylase FTO. Chem Sci (2015)

Release Date

2014-10-01

Peptides

ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE FTO: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE FTO

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