SMTL ID : 4d61.1

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY 9.00 Å
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
None
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH
Citation
Muhs, M. et al., Cryo-Em of Ribosomal 80S Complexes with Termination Factors Reveals the Translocated Cricket Paralysis Virus Ires. Mol.Cell (2015)
Release Date
2015-03-04
Peptides
40S RIBOSOMAL PROTEIN SA: B
40S RIBOSOMAL PROTEIN S3A: C
40S RIBOSOMAL PROTEIN S2: D
40S RIBOSOMAL PROTEIN S3: E
40S RIBOSOMAL PROTEIN S4, Y ISOFORM 1: F
40S RIBOSOMAL PROTEIN S5: G
40S RIBOSOMAL PROTEIN S6: H
40S RIBOSOMAL PROTEIN S7: I
40S RIBOSOMAL PROTEIN S8: J
40S RIBOSOMAL PROTEIN S9: K
40S RIBOSOMAL PROTEIN S10: L
40S RIBOSOMAL PROTEIN S11: M
40S RIBOSOMAL PROTEIN S12: N
40S RIBOSOMAL PROTEIN S13: O
40S RIBOSOMAL PROTEIN S14: P
40S RIBOSOMAL PROTEIN S15: Q
40S RIBOSOMAL PROTEIN S16: R
40S RIBOSOMAL PROTEIN S17: S
40S RIBOSOMAL PROTEIN S18: T
40S RIBOSOMAL PROTEIN S19: U
40S RIBOSOMAL PROTEIN S20: V
40S RIBOSOMAL PROTEIN S21: W
40S RIBOSOMAL PROTEIN S15A: X
40S RIBOSOMAL PROTEIN S23: Y
40S RIBOSOMAL PROTEIN S24: Z
40S RIBOSOMAL PROTEIN S25: 0
40S RIBOSOMAL PROTEIN S26: 1
40S RIBOSOMAL PROTEIN S27: 2
40S RIBOSOMAL PROTEIN S28: 3
40S RIBOSOMAL PROTEIN S29: 4
40S RIBOSOMAL PROTEIN S30: 5
UBIQUITIN-40S RIBOSOMAL PROTEIN S27A: 6
GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT BETA-2-LIKE 1: 7
EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1: 8
EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR GTP-BINDING SUBUNIT ERF3A: 9
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
B
A
C
B
D
C
E
D
F
E
G
F
H
G
I
H
J
I
K
J
L
K
M
L
N
M
O
N
P
O
Q
P
R
Q
S
R
T
S
U
T
V
U
W
V
X
W
Y
X
Z
Y
0
Z
1
a
2
b
3
c
4
d
5
e
6
f
7
g
8
h
9
i

40S RIBOSOMAL PROTEIN SA

40S RIBOSOMAL PROTEIN S3A

40S RIBOSOMAL PROTEIN S2

40S RIBOSOMAL PROTEIN S3

40S RIBOSOMAL PROTEIN S4, Y ISOFORM 1

40S RIBOSOMAL PROTEIN S5

40S RIBOSOMAL PROTEIN S6

40S RIBOSOMAL PROTEIN S7

40S RIBOSOMAL PROTEIN S8

40S RIBOSOMAL PROTEIN S9

40S RIBOSOMAL PROTEIN S10

40S RIBOSOMAL PROTEIN S11

40S RIBOSOMAL PROTEIN S12

40S RIBOSOMAL PROTEIN S13

40S RIBOSOMAL PROTEIN S14

40S RIBOSOMAL PROTEIN S15

40S RIBOSOMAL PROTEIN S16

40S RIBOSOMAL PROTEIN S17

40S RIBOSOMAL PROTEIN S18

40S RIBOSOMAL PROTEIN S19

40S RIBOSOMAL PROTEIN S20

40S RIBOSOMAL PROTEIN S21

40S RIBOSOMAL PROTEIN S15A

40S RIBOSOMAL PROTEIN S23

40S RIBOSOMAL PROTEIN S24

40S RIBOSOMAL PROTEIN S25

40S RIBOSOMAL PROTEIN S26

40S RIBOSOMAL PROTEIN S27

40S RIBOSOMAL PROTEIN S28

40S RIBOSOMAL PROTEIN S29

40S RIBOSOMAL PROTEIN S30

UBIQUITIN-40S RIBOSOMAL PROTEIN S27A

GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT BETA-2-LIKE 1

EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1

EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR GTP-BINDING SUBUNIT ERF3A

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