SMTL ID : 6w2s.1

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY 3.47 Å
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
1 x MG: MAGNESIUM ION(Non-covalent)
1 x ZN: ZINC ION(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Neupane, R. et al., A complex IRES at the 5'-UTR of a viral mRNA assembles a functional 48S complex via an uAUG intermediate. Elife (2020)
Release Date
2020-04-22
Peptides
uS2: C
eS1: D
uS5: E
eS4: F
eS6: G
eS7: H
eS8: I
uS4: J
uS17: K
uS15: L
uS11: M
eS21: N
uS8: O
uS12: P
eS24: Q
eS26: R
eS27: S
eS30: T
uS3: U
uS7: V
eS10: W
eS12: X
uS19: Y
uS9: Z
eS17: 0
uS13: 1
eS19: 2
uS10: 3
eS25: 4
eS28: 5
eS29: 6
eS31: 7
RACK1: 8
Eukaryotic translation initiation factor 3 subunit A: 9
Eukaryotic translation initiation factor 3 subunit C: a
Eukaryotic translation initiation factor 3 subunit E: b
Eukaryotic translation initiation factor 3 subunit F: c
Eukaryotic translation initiation factor 3 subunit H: d
Eukaryotic translation initiation factor 3 subunit K: e
Eukaryotic translation initiation factor 3 subunit L: f
Eukaryotic translation initiation factor 3 subunit M: g
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
C
B
D
C
E
D
F
F
G
H
H
I
I
J
J
K
K
M
L
O
M
P
N
W
O
X
P
Y
Q
Z
R
b
S
c
T
f
U
E
V
G
W
L
X
N
Y
Q
Z
R
0
S
1
T
2
U
3
V
4
a
5
d
6
e
7
g
8
h
9
1
a
2
b
3
c
4
d
5
e
6
f
7
g
8

uS2

eS1

uS5

eS4

eS6

eS7

eS8

uS4

uS17

uS15

uS11

eS21

uS8

uS12

eS24

eS26

eS27

eS30

uS3

uS7

eS10

eS12

uS19

uS9

eS17

uS13

eS19

uS10

eS25

eS28

eS29

eS31

RACK1

Eukaryotic translation initiation factor 3 subunit A

Eukaryotic translation initiation factor 3 subunit C

Eukaryotic translation initiation factor 3 subunit E

Eukaryotic translation initiation factor 3 subunit F

Eukaryotic translation initiation factor 3 subunit H

Eukaryotic translation initiation factor 3 subunit K

Eukaryotic translation initiation factor 3 subunit L

Eukaryotic translation initiation factor 3 subunit M

Related Entries With Identical Sequence

3j7p.51 | 3j7p.52 | 3j7p.53 | 3j7p.54 | 3j7p.55 | 3j7p.57 | 3j7p.59 | 3j7p.60 | 3j7p.63 | 3j7p.64 | 3j7p.68 | 3j7p.71 | 3j7p.73 | 3j7p.74 | 3j7p.77 | 3j7p.78 | 3j7r.52 | 3j7r.53 | 3j7r.54 | 3j7r.55 | 3j7r.56 | 3j7r.58 | 3j7r.60 | 3j7r.61 | 3j7r.64 | 3j7r.65 | 3j7r.69 | 3j7r.72 | 3j7r.74 | 3j7r.75  more...