SMTL ID : 4dc9.1 (1 other biounit)

Hexameric ring of Methanococcus voltae RadA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-hexamer

Ligands

12 x NO3: NITRATE ION(Non-functional Binders)

NO3.1: 7 residues within 4Å: Chain A: G.52, S.53, G.54, K.55, T.56, Q.57 Ligands: NO3.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.54, A:G.54, A:T.56, A:Q.57, A:Q.57 NO3.2: 8 residues within 4Å: Chain A: V.50, F.51, G.52, S.53, G.54, K.55, T.56 Ligands: NO3.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.52, A:S.53, A:G.54, A:K.55, A:T.56 NO3.3: 6 residues within 4Å: Chain B: G.52, G.54, K.55, T.56, Q.57 Ligands: NO3.4 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.54, B:G.54, B:T.56, B:Q.57, B:Q.57 NO3.4: 8 residues within 4Å: Chain B: V.50, F.51, G.52, S.53, G.54, K.55, T.56 Ligands: NO3.3 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:V.50, B:G.52, B:S.53, B:G.54, B:K.55, B:T.56, B:T.56, B:T.56 Water bridges: B:K.55 NO3.5: 6 residues within 4Å: Chain C: G.52, G.54, K.55, T.56, Q.57 Ligands: NO3.6 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:G.52, C:G.54, C:T.56, C:Q.57, C:Q.57 NO3.6: 8 residues within 4Å: Chain C: V.50, F.51, G.52, S.53, G.54, K.55, T.56 Ligands: NO3.5 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:G.52, C:S.53, C:G.54, C:K.55, C:T.56, C:T.56 Water bridges: C:K.55 NO3.7: 7 residues within 4Å: Chain D: G.52, S.53, G.54, K.55, T.56, Q.57 Ligands: NO3.8 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:G.54, D:G.54, D:Q.57, D:Q.57 NO3.8: 8 residues within 4Å: Chain D: V.50, F.51, G.52, S.53, G.54, K.55, T.56 Ligands: NO3.7 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:G.52, D:S.53, D:G.54, D:K.55, D:T.56, D:T.56 NO3.9: 7 residues within 4Å: Chain E: G.52, S.53, G.54, K.55, T.56, Q.57 Ligands: NO3.10 6 PLIP interactions: 6 interactions with chain E Hydrogen bonds: E:G.54, E:G.54, E:K.55, E:T.56, E:Q.57, E:Q.57 NO3.10: 8 residues within 4Å: Chain E: V.50, F.51, G.52, S.53, G.54, K.55, T.56 Ligands: NO3.9 8 PLIP interactions: 8 interactions with chain E Hydrogen bonds: E:V.50, E:G.52, E:S.53, E:G.54, E:K.55, E:T.56, E:T.56 Water bridges: E:K.55 NO3.11: 7 residues within 4Å: Chain F: G.52, S.53, G.54, K.55, T.56, Q.57 Ligands: NO3.12 5 PLIP interactions: 5 interactions with chain F Hydrogen bonds: F:G.54, F:G.54, F:T.56, F:Q.57, F:Q.57 NO3.12: 8 residues within 4Å: Chain F: V.50, F.51, G.52, S.53, G.54, K.55, T.56 Ligands: NO3.11 5 PLIP interactions: 5 interactions with chain F Hydrogen bonds: F:G.52, F:S.53, F:G.54, F:K.55, F:T.56

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Du, L. et al., Structure of a hexameric form of RadA recombinase from Methanococcus voltae. Acta Crystallogr.,Sect.F (2012)

Release Date

2012-05-02

Peptides

DNA repair and recombination protein radA: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

DNA repair and recombination protein radA

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