SMTL ID : 4qkq.2 (2 other biounits)

RadA from Methanococcus Voltae in complex with copper phthalocyanine tetrasulfonate inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-hexamer

Ligands

1 x 35N: Copper(II) tetrapyrrole(Non-functional Binders)

35N.1: 0 residues within 4Å: (No contacts) 0 PLIP interactions:

13 x NO3: NITRATE ION(Non-functional Binders)

NO3.2: 7 residues within 4Å: Chain A: G.52, S.53, G.54, K.55, T.56, Q.57 Ligands: NO3.3 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.52, A:G.54, A:G.54, A:T.56, A:Q.57, A:Q.57 NO3.3: 8 residues within 4Å: Chain A: V.50, F.51, G.52, S.53, G.54, K.55, T.56 Ligands: NO3.2 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.52, A:S.53, A:G.54, A:K.55, A:T.56, A:T.56 Water bridges: A:K.55 NO3.4: 7 residues within 4Å: Chain B: G.52, S.53, G.54, K.55, T.56, Q.57 Ligands: NO3.5 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.54, B:G.54, B:T.56, B:Q.57, B:Q.57 NO3.5: 8 residues within 4Å: Chain B: V.50, F.51, G.52, S.53, G.54, K.55, T.56 Ligands: NO3.4 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:V.50, B:G.52, B:S.53, B:G.54, B:K.55, B:T.56, B:T.56, B:T.56 NO3.6: 4 residues within 4Å: Chain C: G.235, K.236, K.239, I.256 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:K.236 NO3.7: 7 residues within 4Å: Chain C: G.52, S.53, G.54, K.55, T.56, Q.57 Ligands: NO3.8 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:G.54, C:G.54, C:T.56, C:Q.57, C:Q.57 NO3.8: 8 residues within 4Å: Chain C: V.50, F.51, G.52, S.53, G.54, K.55, T.56 Ligands: NO3.7 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:G.52, C:S.53, C:G.54, C:K.55, C:T.56, C:T.56 Water bridges: C:K.55 NO3.9: 7 residues within 4Å: Chain D: G.52, S.53, G.54, K.55, T.56, Q.57 Ligands: NO3.10 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:G.52, D:G.54, D:G.54, D:T.56, D:Q.57, D:Q.57 Water bridges: D:T.56 NO3.10: 8 residues within 4Å: Chain D: V.50, F.51, G.52, S.53, G.54, K.55, T.56 Ligands: NO3.9 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:G.52, D:S.53, D:G.54, D:K.55, D:T.56 Water bridges: D:K.55, D:T.56 NO3.11: 7 residues within 4Å: Chain E: G.52, S.53, G.54, K.55, T.56, Q.57 Ligands: NO3.12 5 PLIP interactions: 5 interactions with chain E Hydrogen bonds: E:G.54, E:G.54, E:T.56, E:Q.57, E:Q.57 NO3.12: 8 residues within 4Å: Chain E: V.50, F.51, G.52, S.53, G.54, K.55, T.56 Ligands: NO3.11 7 PLIP interactions: 7 interactions with chain E Hydrogen bonds: E:V.50, E:G.52, E:S.53, E:G.54, E:K.55, E:T.56, E:T.56 NO3.13: 7 residues within 4Å: Chain F: G.52, S.53, G.54, K.55, T.56, Q.57 Ligands: NO3.14 6 PLIP interactions: 6 interactions with chain F Hydrogen bonds: F:G.52, F:G.54, F:G.54, F:T.56, F:Q.57, F:Q.57 NO3.14: 8 residues within 4Å: Chain F: V.50, F.51, G.52, S.53, G.54, K.55, T.56 Ligands: NO3.13 6 PLIP interactions: 6 interactions with chain F Hydrogen bonds: F:G.52, F:S.53, F:G.54, F:K.55, F:T.56 Water bridges: F:K.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rao, D.E.C.S. et al., Crystal Structure of an archaeal Rad51 homolog in complex with a phthalocyanine tetrasulfonate inhibitor. To be Published

Release Date

2015-06-10

Peptides

DNA repair and recombination protein RadA: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

C
I

D
J

E
K

F
L

DNA repair and recombination protein RadA

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