SMTL ID : 4dc9.2 (1 other biounit)

Hexameric ring of Methanococcus voltae RadA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-12-mer

Ligands

24 x NO3: NITRATE ION(Non-functional Binders)

NO3.1: 7 residues within 4Å: Chain A: G.52, S.53, G.54, K.55, T.56, Q.57 Ligands: NO3.2 Ligand excluded by PLIP NO3.2: 8 residues within 4Å: Chain A: V.50, F.51, G.52, S.53, G.54, K.55, T.56 Ligands: NO3.1 Ligand excluded by PLIP NO3.3: 6 residues within 4Å: Chain B: G.52, G.54, K.55, T.56, Q.57 Ligands: NO3.4 Ligand excluded by PLIP NO3.4: 8 residues within 4Å: Chain B: V.50, F.51, G.52, S.53, G.54, K.55, T.56 Ligands: NO3.3 Ligand excluded by PLIP NO3.5: 6 residues within 4Å: Chain C: G.52, G.54, K.55, T.56, Q.57 Ligands: NO3.6 Ligand excluded by PLIP NO3.6: 8 residues within 4Å: Chain C: V.50, F.51, G.52, S.53, G.54, K.55, T.56 Ligands: NO3.5 Ligand excluded by PLIP NO3.7: 7 residues within 4Å: Chain D: G.52, S.53, G.54, K.55, T.56, Q.57 Ligands: NO3.8 Ligand excluded by PLIP NO3.8: 8 residues within 4Å: Chain D: V.50, F.51, G.52, S.53, G.54, K.55, T.56 Ligands: NO3.7 Ligand excluded by PLIP NO3.9: 7 residues within 4Å: Chain E: G.52, S.53, G.54, K.55, T.56, Q.57 Ligands: NO3.10 Ligand excluded by PLIP NO3.10: 8 residues within 4Å: Chain E: V.50, F.51, G.52, S.53, G.54, K.55, T.56 Ligands: NO3.9 Ligand excluded by PLIP NO3.11: 7 residues within 4Å: Chain F: G.52, S.53, G.54, K.55, T.56, Q.57 Ligands: NO3.12 Ligand excluded by PLIP NO3.12: 8 residues within 4Å: Chain F: V.50, F.51, G.52, S.53, G.54, K.55, T.56 Ligands: NO3.11 Ligand excluded by PLIP NO3.13: 7 residues within 4Å: Chain G: G.52, S.53, G.54, K.55, T.56, Q.57 Ligands: NO3.14 Ligand excluded by PLIP NO3.14: 8 residues within 4Å: Chain G: V.50, F.51, G.52, S.53, G.54, K.55, T.56 Ligands: NO3.13 Ligand excluded by PLIP NO3.15: 6 residues within 4Å: Chain H: G.52, G.54, K.55, T.56, Q.57 Ligands: NO3.16 Ligand excluded by PLIP NO3.16: 8 residues within 4Å: Chain H: V.50, F.51, G.52, S.53, G.54, K.55, T.56 Ligands: NO3.15 Ligand excluded by PLIP NO3.17: 6 residues within 4Å: Chain I: G.52, G.54, K.55, T.56, Q.57 Ligands: NO3.18 Ligand excluded by PLIP NO3.18: 8 residues within 4Å: Chain I: V.50, F.51, G.52, S.53, G.54, K.55, T.56 Ligands: NO3.17 Ligand excluded by PLIP NO3.19: 7 residues within 4Å: Chain J: G.52, S.53, G.54, K.55, T.56, Q.57 Ligands: NO3.20 Ligand excluded by PLIP NO3.20: 8 residues within 4Å: Chain J: V.50, F.51, G.52, S.53, G.54, K.55, T.56 Ligands: NO3.19 Ligand excluded by PLIP NO3.21: 7 residues within 4Å: Chain K: G.52, S.53, G.54, K.55, T.56, Q.57 Ligands: NO3.22 Ligand excluded by PLIP NO3.22: 8 residues within 4Å: Chain K: V.50, F.51, G.52, S.53, G.54, K.55, T.56 Ligands: NO3.21 Ligand excluded by PLIP NO3.23: 7 residues within 4Å: Chain L: G.52, S.53, G.54, K.55, T.56, Q.57 Ligands: NO3.24 Ligand excluded by PLIP NO3.24: 8 residues within 4Å: Chain L: V.50, F.51, G.52, S.53, G.54, K.55, T.56 Ligands: NO3.23 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Du, L. et al., Structure of a hexameric form of RadA recombinase from Methanococcus voltae. Acta Crystallogr.,Sect.F (2012)

Release Date

2012-05-02

Peptides

DNA repair and recombination protein radA: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
A

H
B

I
C

J
D

K
E

L
F

DNA repair and recombination protein radA

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