- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- monomer
- Ligands
- 8 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
- 1 x 0KL: 5-(5-aminopent-1-yn-1-yl)-2'-deoxyuridine 5'-(tetrahydrogen triphosphate)(Non-covalent)
0KL.3: 21 residues within 4Å:- Chain A: R.281, D.318, Y.319, S.320, Q.321, I.322, E.323, H.347, R.367, R.368, K.371, T.372, F.375, D.493
- Chain B: C.12
- Chain C: A.4, G.5
- Ligands: MG.1, MG.2, FMT.4, CL.17
18 PLIP interactions:18 interactions with chain A- Hydrophobic interactions: A:E.323, A:R.368, A:F.375
- Hydrogen bonds: A:R.281, A:Q.321, A:I.322, A:E.323
- Water bridges: A:D.318, A:D.318, A:D.318, A:K.371, A:K.371
- Salt bridges: A:H.347, A:R.367, A:K.371, A:K.371, A:K.371
- pi-Stacking: A:F.375
- 6 x FMT: FORMIC ACID(Non-functional Binders)
FMT.4: 7 residues within 4Å:- Chain A: R.281, E.323, Q.462, A.465, A.466, H.492
- Ligands: 0KL.3
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:R.281
FMT.8: 3 residues within 4Å:- Chain A: R.133, W.136, F.432
No protein-ligand interaction detected (PLIP)FMT.11: 4 residues within 4Å:- Chain A: L.441, E.442, A.443, R.444
No protein-ligand interaction detected (PLIP)FMT.13: 5 residues within 4Å:- Chain A: E.55, R.57, G.78, D.79, R.143
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.55, A:D.79
FMT.14: 5 residues within 4Å:- Chain A: R.21, E.23, W.26, L.260, D.286
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.21, A:E.23, A:W.26, A:D.286
FMT.15: 3 residues within 4Å:- Chain A: K.216
- Chain B: C.6, G.7
No protein-ligand interaction detected (PLIP)- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.7: 6 residues within 4Å:- Chain A: T.252, Y.253, P.287, N.288, N.291
- Chain C: C.9
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:N.288, A:N.291, A:N.291
- Water bridges: A:T.252, A:N.288
EDO.9: 3 residues within 4Å:- Chain A: R.479, E.482, M.483
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.479, A:R.479, A:E.482
EDO.10: 5 residues within 4Å:- Chain A: D.196
- Chain B: C.6
- Chain C: T.12, G.13
- Ligands: MG.19
No protein-ligand interaction detected (PLIP)EDO.18: 2 residues within 4Å:- Chain C: G.13, G.14
No protein-ligand interaction detected (PLIP)- 1 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bergen, K. et al., Structures of KlenTaq DNA Polymerase Caught While Incorporating C5-Modified Pyrimidine and C7-Modified 7-Deazapurine Nucleoside Triphosphates. J.Am.Chem.Soc. (2012)
- Release Date
- 2012-05-16
- Peptides
- DNA polymerase I, thermostable: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- monomer
- Ligands
- 8 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
- 1 x 0KL: 5-(5-aminopent-1-yn-1-yl)-2'-deoxyuridine 5'-(tetrahydrogen triphosphate)(Non-covalent)
- 6 x FMT: FORMIC ACID(Non-functional Binders)
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bergen, K. et al., Structures of KlenTaq DNA Polymerase Caught While Incorporating C5-Modified Pyrimidine and C7-Modified 7-Deazapurine Nucleoside Triphosphates. J.Am.Chem.Soc. (2012)
- Release Date
- 2012-05-16
- Peptides
- DNA polymerase I, thermostable: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A