- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)
- 6 x CA: CALCIUM ION(Non-covalent)
CA.2: 2 residues within 4Å:- Chain A: F.28, D.30
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:F.28, A:D.30, H2O.1, H2O.5
CA.4: 3 residues within 4Å:- Chain A: D.107, Y.137
- Ligands: ACT.6
5 PLIP interactions:2 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:D.107, A:Y.137, H2O.3, H2O.6, H2O.6
CA.8: 2 residues within 4Å:- Chain B: F.28, D.30
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:F.28, B:D.30, H2O.8, H2O.13
CA.10: 3 residues within 4Å:- Chain B: D.107, Y.137
- Ligands: ACT.12
5 PLIP interactions:2 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:D.107, B:Y.137, H2O.10, H2O.13, H2O.14
CA.14: 2 residues within 4Å:- Chain C: F.28, D.30
4 PLIP interactions:2 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:F.28, C:D.30, H2O.16, H2O.20
CA.16: 3 residues within 4Å:- Chain C: D.107, Y.137
- Ligands: ACT.18
5 PLIP interactions:2 interactions with chain C, 3 Ligand-Water interactions- Metal complexes: C:D.107, C:Y.137, H2O.18, H2O.20, H2O.21
- 6 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
MG.3: 3 residues within 4Å:- Chain A: S.17, T.35
- Ligands: GNP.1
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:S.17, A:T.35, H2O.1, H2O.5
MG.5: 2 residues within 4Å:- Ligands: MG.11, MG.17
No protein-ligand interaction detected (PLIP)MG.9: 3 residues within 4Å:- Chain B: S.17, T.35
- Ligands: GNP.7
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:S.17, B:T.35, H2O.8, H2O.12
MG.11: 2 residues within 4Å:- Ligands: MG.5, MG.17
No protein-ligand interaction detected (PLIP)MG.15: 3 residues within 4Å:- Chain C: S.17, T.35
- Ligands: GNP.13
4 PLIP interactions:2 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:S.17, C:T.35, H2O.15, H2O.20
MG.17: 2 residues within 4Å:- Ligands: MG.5, MG.11
No protein-ligand interaction detected (PLIP)- 3 x ACT: ACETATE ION(Non-functional Binders)
ACT.6: 8 residues within 4Å:- Chain A: R.97, K.101, D.107, D.108, V.109, M.111, Y.137
- Ligands: CA.4
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:R.97, A:K.101
- Hydrogen bonds: A:D.107, A:V.109
- Water bridges: A:R.97
- Salt bridges: A:R.97
ACT.12: 8 residues within 4Å:- Chain B: R.97, K.101, D.107, D.108, V.109, M.111, Y.137
- Ligands: CA.10
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:R.97, B:K.101
- Hydrogen bonds: B:D.107, B:V.109
- Water bridges: B:R.97
- Salt bridges: B:R.97
ACT.18: 8 residues within 4Å:- Chain C: R.97, K.101, D.107, D.108, V.109, M.111, Y.137
- Ligands: CA.16
6 PLIP interactions:6 interactions with chain C- Hydrophobic interactions: C:R.97, C:K.101
- Hydrogen bonds: C:D.107, C:V.109
- Water bridges: C:R.97
- Salt bridges: C:R.97
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Holzapfel, G. et al., Shift in the Equilibrium between On and Off States of the Allosteric Switch in Ras-GppNHp Affected by Small Molecules and Bulk Solvent Composition. Biochemistry (2012)
- Release Date
- 2012-08-08
- Peptides
- GTPase HRas: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)
- 6 x CA: CALCIUM ION(Non-covalent)
- 6 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
- 3 x ACT: ACETATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Holzapfel, G. et al., Shift in the Equilibrium between On and Off States of the Allosteric Switch in Ras-GppNHp Affected by Small Molecules and Bulk Solvent Composition. Biochemistry (2012)
- Release Date
- 2012-08-08
- Peptides
- GTPase HRas: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A