SMTL ID : 8wwc.1 (1 other biounit)

De novo design binder of HRAS -120-4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.1: 25 residues within 4Å: Chain B: A.11, G.12, G.13, V.14, G.15, K.16, S.17, A.18, F.28, V.29, D.30, E.31, Y.32, P.34, T.35, A.59, G.60, N.116, K.117, D.119, L.120, S.145, A.146, K.147 Ligands: MG.2 23 PLIP interactions: 23 interactions with chain B Hydrogen bonds: B:G.13, B:V.14, B:G.15, B:K.16, B:K.16, B:S.17, B:S.17, B:S.17, B:A.18, B:D.30, B:E.31, B:Y.32, B:Y.32, B:T.35, B:G.60, B:N.116, B:K.117, B:K.117, B:A.146, B:K.147 Salt bridges: B:D.119 pi-Stacking: B:F.28, B:F.28

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain B: S.17, D.33, T.35 Ligands: GNP.1 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:S.17, B:T.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, L. et al., De novo design HRAS binder 120-4. To Be Published

Release Date

2024-10-09

Peptides

De novo design protein 120-4: A
GTPase HRas: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
A

De novo design protein 120-4

GTPase HRas

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