SMTL ID : 4dt7.1 (1 other biounit)

Crystal structure of thrombin bound to the activation domain QEDQVDPRLIDGKMTRRGDS of protein C

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 2 residues within 4Å: Chain B: R.233, K.236 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.233, B:K.236 Water bridges: B:D.234, B:G.235

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 5 residues within 4Å: Chain B: K.174, T.177, I.179, R.180, I.181 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.174, B:I.181

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 5 residues within 4Å: Chain B: D.6, P.157, S.158, V.159, Q.161 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.6, B:S.158, B:Q.161 Water bridges: B:D.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pozzi, N. et al., Exposure of R169 controls protein C activation and autoactivation. Blood (2012)

Release Date

2012-05-09

Peptides

Thrombin light chain: A
Thrombin heavy chain: B
Vitamin K-dependent protein C: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
E

Thrombin light chain

Thrombin heavy chain

Vitamin K-dependent protein C

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