SMTL ID : 8tqs.1

Complex of human thrombin (S195A) bound to a bivalent inhibitor comprised of DNA Aptamer HD22 conjugated to Dabigatran with a linker.

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.21 Å
Oligo State
hetero-1-1-mer
Ligands
1 x MG: MAGNESIUM ION(Non-functional Binders)
1 x NA: SODIUM ION(Non-functional Binders)
1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
1 x 4CC: N-[(2-{[(4-carbamimidoylphenyl)amino]methyl}-1-methyl-1H-benzimidazol-5-yl)carbonyl]-N-pyridin-2-yl-beta-alanine(Non-covalent)
1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Yu, H. et al., Aptameric hirudins as selective and reversible EXosite-ACTive site (EXACT) inhibitors. Nat Commun (2024)
Release Date
2024-05-01
Peptides
Thrombin heavy chain: B
Prothrombin: C
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
B
H
C
L

Thrombin heavy chain

Prothrombin

Related Entries With Identical Sequence

1jou.1 | 1jou.2 | 1jou.3 | 1tb6.1 | 2b5t.1 | 2b5t.2 | 3b9f.1 | 3gis.1 | 3gis.2 | 3gis.3 | 3lu9.1 | 3lu9.2 | 4dt7.1 | 4dt7.2 | 4dy7.1 | 4dy7.2 | 4hfp.1 | 4hfp.2 | 6px5.1