SMTL ID : 4dt7.2 (1 other biounit)

Crystal structure of thrombin bound to the activation domain QEDQVDPRLIDGKMTRRGDS of protein C

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 5 residues within 4Å: Chain B: L.130, I.167, V.168, R.170, F.186 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:I.167 Hydrogen bonds: B:L.130 Salt bridges: B:R.170

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 3 residues within 4Å: Chain B: D.232, R.233, K.236 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.236, B:K.236 Water bridges: B:G.235

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pozzi, N. et al., Exposure of R169 controls protein C activation and autoactivation. Blood (2012)

Release Date

2012-05-09

Peptides

Thrombin light chain: A
Thrombin heavy chain: B
Vitamin K-dependent protein C: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
F

Thrombin light chain

Thrombin heavy chain

Vitamin K-dependent protein C

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