- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.01 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 2 x 0M8: [2-(heptylamino)ethane-1,1-diyl]bis(phosphonic acid)(Non-covalent)
0M8.4: 16 residues within 4Å:- Chain A: Y.94, D.98, M.101, D.102, R.107, T.163, Q.167, K.207, Q.247, D.250, K.264
- Chain B: N.126, I.129
- Ligands: MG.1, MG.2, MG.3
15 PLIP interactions:14 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:Y.94, A:Y.94, A:D.98, A:T.163, A:Q.167, B:I.129
- Hydrogen bonds: A:R.107, A:R.107, A:K.207, A:Q.247, A:K.264
- Water bridges: A:D.98, A:D.170, A:K.264, A:K.264
0M8.15: 16 residues within 4Å:- Chain A: N.126, I.129
- Chain B: Y.94, D.98, M.101, D.102, R.107, T.163, Q.167, K.207, Q.247, D.250, K.264
- Ligands: MG.12, MG.13, MG.14
18 PLIP interactions:17 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:Y.94, B:Y.94, B:D.98, B:T.163, B:Q.167, A:I.129
- Hydrogen bonds: B:R.107, B:R.107, B:K.207, B:Q.247, B:K.264
- Water bridges: B:D.98, B:D.170, B:D.254, B:D.254, B:D.254, B:K.264, B:K.264
- 6 x SO4: SULFATE ION(Non-functional Binders)
SO4.5: 7 residues within 4Å:- Chain A: G.47, K.48, Y.49, F.50, R.51, Q.91, R.108
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:K.48, A:Y.49, A:F.50, A:Q.91
- Water bridges: A:R.51, A:E.88, A:Q.91
- Salt bridges: A:R.51, A:R.108
SO4.6: 3 residues within 4Å:- Chain A: F.17, Q.21, H.141
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:Q.21
- Water bridges: A:H.141
- Salt bridges: A:H.141, B:K.158
SO4.7: 3 residues within 4Å:- Chain A: R.237, S.334, L.335
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.334
- Water bridges: A:S.334, A:Q.338
- Salt bridges: A:R.237
SO4.16: 7 residues within 4Å:- Chain B: G.47, K.48, Y.49, F.50, R.51, Q.91, R.108
9 PLIP interactions:9 interactions with chain B- Hydrogen bonds: B:K.48, B:Y.49, B:F.50, B:Q.91
- Water bridges: B:R.51, B:E.88, B:Q.91
- Salt bridges: B:R.51, B:R.108
SO4.17: 3 residues within 4Å:- Chain B: F.17, Q.21, H.141
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:Q.21
- Salt bridges: B:H.141, A:K.158
SO4.18: 3 residues within 4Å:- Chain B: R.237, S.334, L.335
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:S.334
- Water bridges: B:S.334, B:Q.338
- Salt bridges: B:R.237
- 4 x NA: SODIUM ION(Non-functional Binders)
NA.8: 2 residues within 4Å:- Chain A: E.183
- Chain B: F.116
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.183
NA.9: 4 residues within 4Å:- Chain A: D.176, T.189, T.190, D.191
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:T.189, A:T.190, A:T.190, A:D.191
- Water bridges: A:K.179
NA.19: 2 residues within 4Å:- Chain A: F.116
- Chain B: E.183
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.183
- Water bridges: B:E.183
NA.20: 4 residues within 4Å:- Chain B: D.176, T.189, T.190, D.191
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:T.189, B:T.190, B:D.191
- Water bridges: B:K.179
- 2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.10: 9 residues within 4Å:- Chain A: K.132, Q.136, L.153, F.156, Q.157, D.160
- Chain B: Q.136, W.140
- Ligands: PEG.21
5 PLIP interactions:2 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:Q.136
- Water bridges: B:K.132, A:K.132, A:K.132, A:K.132
PEG.21: 9 residues within 4Å:- Chain A: Q.136, W.140
- Chain B: K.132, Q.136, L.153, F.156, Q.157, D.160
- Ligands: PEG.10
7 PLIP interactions:2 interactions with chain A, 5 interactions with chain B- Hydrogen bonds: A:Q.136
- Water bridges: A:K.132, B:K.132, B:K.132, B:K.132, B:D.160, B:D.160
- 2 x ACT: ACETATE ION(Non-functional Binders)
ACT.11: 2 residues within 4Å:- Chain A: K.201, E.244
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:K.201
- Water bridges: A:L.241
ACT.22: 2 residues within 4Å:- Chain B: K.201, E.244
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:K.201
- Water bridges: B:L.241, B:E.244
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Aripirala, S. et al., Design, synthesis, calorimetry, and crystallographic analysis of 2-alkylaminoethyl-1,1-bisphosphonates as inhibitors of Trypanosoma cruzi farnesyl diphosphate synthase. J.Med.Chem. (2012)
- Release Date
- 2013-01-16
- Peptides
- Farnesyl pyrophosphate synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.01 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 2 x 0M8: [2-(heptylamino)ethane-1,1-diyl]bis(phosphonic acid)(Non-covalent)
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 4 x NA: SODIUM ION(Non-functional Binders)
- 2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 2 x ACT: ACETATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Aripirala, S. et al., Design, synthesis, calorimetry, and crystallographic analysis of 2-alkylaminoethyl-1,1-bisphosphonates as inhibitors of Trypanosoma cruzi farnesyl diphosphate synthase. J.Med.Chem. (2012)
- Release Date
- 2013-01-16
- Peptides
- Farnesyl pyrophosphate synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A