- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.35 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 2 x 0M9: [2-(propylamino)ethane-1,1-diyl]bis(phosphonic acid)(Non-covalent)
0M9.4: 14 residues within 4Å:- Chain A: D.98, D.102, R.107, T.163, Q.167, K.207, Y.211, Q.247, D.250, K.264
- Ligands: MG.1, MG.2, MG.3, IPE.5
18 PLIP interactions:18 interactions with chain A- Hydrophobic interactions: A:T.163, A:Y.211
- Hydrogen bonds: A:D.98, A:R.107, A:R.107, A:Q.247, A:D.250, A:K.264
- Water bridges: A:D.102, A:D.102, A:S.104, A:S.104, A:Q.167, A:Q.167, A:D.250, A:D.250, A:K.264, A:K.264
0M9.11: 15 residues within 4Å:- Chain B: Y.94, D.98, D.102, R.107, T.163, Q.167, K.207, Y.211, Q.247, D.250, K.264
- Ligands: MG.8, MG.9, MG.10, IPE.12
15 PLIP interactions:15 interactions with chain B- Hydrophobic interactions: B:Y.94, B:T.163, B:Y.211
- Hydrogen bonds: B:D.98, B:R.107, B:R.107, B:Q.247, B:K.264
- Water bridges: B:D.98, B:S.104, B:S.104, B:S.104, B:Q.167, B:Q.167, B:D.254
- 2 x IPE: 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE(Non-covalent)
IPE.5: 13 residues within 4Å:- Chain A: G.47, K.48, R.51, Q.91, L.95, R.108, Y.211, T.212, F.246, Q.247, D.250, K.362
- Ligands: 0M9.4
13 PLIP interactions:13 interactions with chain A- Hydrophobic interactions: A:L.95, A:F.246
- Hydrogen bonds: A:K.48, A:Q.91, A:R.360
- Water bridges: A:R.107, A:K.264, A:K.264
- Salt bridges: A:R.51, A:R.51, A:R.108, A:K.362, A:K.362
IPE.12: 12 residues within 4Å:- Chain B: G.47, K.48, R.51, Q.91, R.108, Y.211, F.246, Q.247, D.250, K.264, R.360
- Ligands: 0M9.11
14 PLIP interactions:14 interactions with chain B- Hydrophobic interactions: B:F.246
- Hydrogen bonds: B:K.48, B:R.51, B:Q.91, B:R.360
- Water bridges: B:Y.49, B:Y.49, B:R.107, B:K.264
- Salt bridges: B:K.48, B:K.48, B:R.51, B:R.108, B:K.264
- 3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.6: 9 residues within 4Å:- Chain A: T.42, T.43, L.95, V.96, D.99, R.107, C.112, W.113, Y.114
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:T.42, A:W.113, A:Y.114
PEG.13: 9 residues within 4Å:- Chain B: T.43, A.92, L.95, V.96, D.99, R.107, C.112, W.113, Y.114
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:V.96, B:V.96, B:W.113, B:Y.114
PEG.14: 5 residues within 4Å:- Chain B: E.13, F.17, H.78, H.141, Y.142
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:E.13, B:H.78, B:H.141
- 2 x SO4: SULFATE ION(Non-functional Binders)
SO4.7: 4 residues within 4Å:- Chain A: F.17, Q.21, H.141
- Chain B: K.158
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain A- Salt bridges: B:K.158, A:H.141
- Hydrogen bonds: A:Q.21
SO4.15: 4 residues within 4Å:- Chain A: K.158
- Chain B: F.17, Q.21, H.141
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:Q.21
- Salt bridges: B:H.141, A:K.158
- 1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Aripirala, S. et al., Design, synthesis, calorimetry, and crystallographic analysis of 2-alkylaminoethyl-1,1-bisphosphonates as inhibitors of Trypanosoma cruzi farnesyl diphosphate synthase. J.Med.Chem. (2012)
- Release Date
- 2013-01-16
- Peptides
- Farnesyl pyrophosphate synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.35 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 2 x 0M9: [2-(propylamino)ethane-1,1-diyl]bis(phosphonic acid)(Non-covalent)
- 2 x IPE: 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE(Non-covalent)
- 3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Aripirala, S. et al., Design, synthesis, calorimetry, and crystallographic analysis of 2-alkylaminoethyl-1,1-bisphosphonates as inhibitors of Trypanosoma cruzi farnesyl diphosphate synthase. J.Med.Chem. (2012)
- Release Date
- 2013-01-16
- Peptides
- Farnesyl pyrophosphate synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B