SMTL ID : 4eiy.1

Crystal structure of the chimeric protein of A2aAR-BRIL in complex with ZM241385 at 1.8A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x ZMA: 4-{2-[(7-amino-2-furan-2-yl[1,2,4]triazolo[1,5-a][1,3,5]triazin-5-yl)amino]ethyl}phenol(Non-covalent)

ZMA.1: 12 residues within 4Å: Chain A: L.110, F.193, E.194, M.202, W.367, L.370, H.371, N.374, H.385, L.388, M.391, I.395 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.110, A:W.367, A:L.370, A:L.388, A:M.391 Hydrogen bonds: A:N.374, A:N.374 Water bridges: A:F.193 Salt bridges: A:E.194 pi-Stacking: A:F.193, A:F.193

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 3 residues within 4Å: Chain A: D.77, S.116, N.401 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.77, A:S.116 Water bridges: A:D.77

3 x CLR: CHOLESTEROL(Non-covalent)

CLR.3: 9 residues within 4Å: Chain A: F.87, F.95, A.97, A.98, G.101, F.104, I.105 Ligands: OLC.24, OLC.28 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.87, A:F.87, A:F.95, A:A.98, A:F.104, A:I.105, A:I.105 Hydrogen bonds: A:A.98 CLR.4: 10 residues within 4Å: Chain A: L.365, L.368, P.369, I.373, F.376, C.383, S.384, A.386, L.390 Ligands: OLA.7 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.365, A:L.368, A:P.369, A:I.373, A:F.376, A:L.390 Hydrogen bonds: A:S.384 Water bridges: A:S.384 CLR.5: 8 residues within 4Å: Chain A: F.207, L.212, L.368, C.375, F.376, F.379, C.380 Ligands: OLC.27 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.207, A:L.212, A:L.368, A:F.376, A:F.376, A:F.376, A:F.379

16 x OLA: OLEIC ACID(Non-covalent)(Non-functional Binders)

OLA.6: 10 residues within 4Å: Chain A: V.82, P.86, I.89, T.90, T.93, F.95 Ligands: OLA.8, OLA.9, OLA.20, OLC.24 Ligand excluded by PLIP OLA.7: 5 residues within 4Å: Chain A: S.384, H.385, P.387, L.393 Ligands: CLR.4 Ligand excluded by PLIP OLA.8: 6 residues within 4Å: Chain A: I.35, L.39, I.89 Ligands: OLA.6, OLA.10, OLA.20 Ligand excluded by PLIP OLA.9: 2 residues within 4Å: Ligands: OLA.6, OLC.24 Ligand excluded by PLIP OLA.10: 6 residues within 4Å: Chain A: I.28, S.31, S.32, T.36, L.39 Ligands: OLA.8 Ligand excluded by PLIP OLA.11: 7 residues within 4Å: Chain A: F.69, F.118, A.122, I.125, I.129, I.149, C.153 Ligand excluded by PLIP OLA.12: 1 residues within 4Å: Chain A: W.389 Ligand excluded by PLIP OLA.13: 4 residues within 4Å: Chain A: L.216, G.220, R.224, L.227 Ligand excluded by PLIP OLA.14: 5 residues within 4Å: Chain A: L.44, T.400, V.403, F.407 Ligands: OLA.19 Ligand excluded by PLIP OLA.15: 7 residues within 4Å: Chain A: L.44, L.47, G.48, V.50, W.54, F.407, V.428 Ligand excluded by PLIP OLA.16: 7 residues within 4Å: Chain A: G.30, S.31, S.92, L.388, Y.392, L.393, V.396 Ligand excluded by PLIP OLA.17: 2 residues within 4Å: Chain A: V.155, L.156 Ligand excluded by PLIP OLA.18: 4 residues within 4Å: Chain A: F.158, L.162, M.165 Ligands: OLC.25 Ligand excluded by PLIP OLA.19: 3 residues within 4Å: Chain A: Y.411, R.412 Ligands: OLA.14 Ligand excluded by PLIP OLA.20: 2 residues within 4Å: Ligands: OLA.6, OLA.8 Ligand excluded by PLIP OLA.21: 3 residues within 4Å: Chain A: C.53, W.57 Ligands: OLB.26 Ligand excluded by PLIP

6 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.22: 3 residues within 4Å: Chain A: Y.204, F.379 Ligands: OLC.27 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.204 OLC.23: 1 residues within 4Å: Chain A: F.104 No protein-ligand interaction detected (PLIP) OLC.24: 8 residues within 4Å: Chain A: V.82, L.83, P.86, T.90, F.95 Ligands: CLR.3, OLA.6, OLA.9 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.82, A:L.83, A:P.86, A:T.90, A:F.95 Water bridges: A:C.96 OLC.25: 3 residues within 4Å: Chain A: M.165, L.166 Ligands: OLA.18 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.166 Hydrogen bonds: A:M.165 OLC.27: 4 residues within 4Å: Chain A: L.212, F.379 Ligands: CLR.5, OLC.22 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.212 Hydrogen bonds: A:F.379 OLC.28: 8 residues within 4Å: Chain A: Y.68, V.71, A.75, L.83, F.108, W.154 Ligands: CLR.3, OLB.26 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:A.75, A:L.83, A:F.108, A:W.154, A:W.154 Hydrogen bonds: A:Y.68

1 x OLB: (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLB.26: 8 residues within 4Å: Chain A: C.53, V.56, W.57, V.71, A.75, A.79 Ligands: OLA.21, OLC.28 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.71, A:A.75, A:A.79

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.29: 4 residues within 4Å: Chain A: T.144, R.145, I.149 Ligands: PEG.30 No protein-ligand interaction detected (PLIP) PEG.30: 2 residues within 4Å: Chain A: R.145 Ligands: PEG.29 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.145

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, W. et al., Structural basis for allosteric regulation of GPCRs by sodium ions. Science (2012)

Release Date

2012-07-25

Peptides

Adenosine receptor A2a/Soluble cytochrome b562 chimera: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Adenosine receptor A2a/Soluble cytochrome b562 chimera

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