SMTL ID : 8rqq.1

In meso structure of the adenosine A2a G protein-coupled receptor, A2aR, in 7.10 monoacylglycerol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.37 Å

Oligo State

monomer

Ligands

1 x ZMA: 4-{2-[(7-amino-2-furan-2-yl[1,2,4]triazolo[1,5-a][1,3,5]triazin-5-yl)amino]ethyl}phenol(Non-covalent)

ZMA.1: 18 residues within 4Å: Chain A: V.109, L.110, L.192, F.193, E.194, M.199, M.202, N.206, W.367, L.370, H.371, I.373, N.374, H.385, L.388, M.391, Y.392, I.395 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.110, A:W.367, A:L.370 Hydrogen bonds: A:N.374, A:N.374 Water bridges: A:Y.392 Salt bridges: A:E.194 pi-Stacking: A:F.193, A:F.193

3 x CLR: CHOLESTEROL(Non-covalent)

CLR.2: 15 residues within 4Å: Chain A: A.364, L.365, L.368, P.369, I.372, I.373, F.376, C.383, S.384, H.385, A.386, P.387, L.390 Ligands: 01.5, 01.15 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.365, A:L.368, A:P.369, A:P.369, A:I.372, A:I.372, A:I.373, A:L.390 Hydrogen bonds: A:S.384, A:S.384 CLR.3: 13 residues within 4Å: Chain A: L.83, F.87, F.95, A.97, A.98, G.101, C.102, F.104, I.105, Q.188 Ligands: 01.7, 01.8, 01.11 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.83, A:F.87, A:F.87, A:I.105, A:I.105 Hydrogen bonds: A:A.98 CLR.4: 11 residues within 4Å: Chain A: F.207, F.208, L.212, L.368, I.372, C.375, F.376, F.379, C.380 Ligands: 01.5, 01.12 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.207, A:F.208, A:L.368, A:I.372, A:F.376, A:F.376, A:F.376, A:F.379, A:F.379

8 x 01: 7.10 monoacylglycerol (S-form)

01.5: 8 residues within 4Å: Chain A: L.365, L.368, I.372, F.376, C.383, S.384 Ligands: CLR.2, CLR.4 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.368, A:I.372, A:F.376 01.6: 9 residues within 4Å: Chain A: V.50, C.53, W.54, W.57, I.78, V.82 Ligands: 01.8, 01.9, 01.11 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.57, A:W.57, A:W.57, A:I.78, A:V.82 Hydrogen bonds: A:W.57 01.7: 17 residues within 4Å: Chain A: Y.68, V.71, S.72, A.75, A.76, A.79, L.83, F.87, F.104, F.108, L.112, K.147, I.150, W.154, F.158 Ligands: CLR.3, 01.8 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:A.79, A:L.83, A:F.104, A:W.154, A:W.154, A:F.158 01.8: 15 residues within 4Å: Chain A: C.53, V.56, W.57, Q.63, Y.68, V.71, A.75, I.78, A.79, V.82, L.83 Ligands: CLR.3, 01.6, 01.7, 01.11 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.71, A:I.78, A:A.79 Hydrogen bonds: A:C.53 01.9: 11 residues within 4Å: Chain A: L.39, I.46, G.81, V.82, P.86, I.89, T.90, T.93, F.95 Ligands: 01.6, 01.11 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.82, A:V.82 01.11: 12 residues within 4Å: Chain A: V.82, L.83, P.86, F.87, T.90, F.95, C.96, I.105 Ligands: CLR.3, 01.6, 01.8, 01.9 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.83, A:P.86, A:F.87 01.12: 8 residues within 4Å: Chain A: F.208, L.212, V.213, L.216, F.379, P.381 Ligands: CLR.4, GOL.14 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.208, A:L.212, A:L.216, A:F.379, A:F.379 01.15: 13 residues within 4Å: Chain A: L.365, P.369, I.373, S.384, H.385, A.386, P.387, W.389, L.390, L.393, A.394, L.397 Ligands: CLR.2 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.365, A:P.369, A:L.390, A:L.397

1 x 02: 7.10 monoacylglycerol (R-form)

02.10: 16 residues within 4Å: Chain A: G.30, S.31, V.33, Y.34, V.37, L.362, L.365, C.366, L.388, W.389, Y.392, L.393, V.396, L.397, T.400, V.404 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.33, A:Y.34, A:V.37, A:V.37, A:L.365, A:L.393, A:V.396, A:V.396, A:T.400

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.13: 2 residues within 4Å: Chain A: Y.204 Ligands: GOL.14 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.204, A:Y.204 GOL.14: 5 residues within 4Å: Chain A: Y.204, F.208, F.379 Ligands: 01.12, GOL.13 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.204

1 x NA: SODIUM ION(Non-functional Binders)

NA.16: 6 residues within 4Å: Chain A: L.73, D.77, S.116, F.363, N.401, S.402 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.401

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Krawinski, P. et al., 7.10 MAG. A Novel Host Monoacylglyceride for In Meso (Lipid Cubic Phase) Crystallization of Membrane Proteins. Cryst.Growth Des. (2024)

Release Date

2024-04-03

Peptides

Adenosine receptor A2a,Soluble cytochrome b562: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Adenosine receptor A2a,Soluble cytochrome b562

Related Entries With Identical Sequence