SMTL ID : 4ew1.2 (1 other biounit)

High resolution structure of human glycinamide ribonucleotide transformylase in apo form.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.52 Å

Oligo State

homo-dimer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 8 residues within 4Å: Chain A: G.11, S.12, N.13, L.14, Q.15, A.16, K.45, H.174 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.13, A:Q.15, A:A.16 Water bridges: A:H.174 Salt bridges: A:K.45, A:H.174 PO4.5: 8 residues within 4Å: Chain B: G.11, S.12, N.13, L.14, Q.15, A.16, K.45, H.174 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:N.13, B:Q.15, B:A.16 Water bridges: B:H.174 Salt bridges: B:K.45, B:H.174

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: K.157, R.168 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.157, A:R.168 SO4.3: 4 residues within 4Å: Chain A: P.109, H.121, S.166, K.170 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.166 Water bridges: A:S.12, A:H.121, A:S.166, A:K.170, A:K.170 Salt bridges: A:H.121, A:K.170 SO4.4: 5 residues within 4Å: Chain A: N.119, A.120, H.121, E.122, V.162 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.119, A:H.121, A:E.122 Water bridges: A:N.119 Salt bridges: A:H.121 SO4.6: 2 residues within 4Å: Chain B: K.157, R.168 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:K.157, B:R.168 SO4.7: 4 residues within 4Å: Chain B: P.109, H.121, S.166, K.170 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:S.166 Water bridges: B:S.12, B:H.121, B:H.121, B:S.166, B:K.170, B:K.170 Salt bridges: B:H.121, B:K.170 SO4.8: 5 residues within 4Å: Chain B: N.119, A.120, H.121, E.122, V.162 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:N.119, B:H.121, B:E.122 Water bridges: B:N.119, B:H.121 Salt bridges: B:H.121

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Connelly, S. et al., Biological and Structural Evaluation of 10R- and 10S-Methylthio-DDACTHF Reveals a New Role for Sulfur in Inhibition of Glycinamide Ribonucleotide Transformylase. Biochemistry (2013)

Release Date

2013-07-31

Peptides

Trifunctional purine biosynthetic protein adenosine-3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Trifunctional purine biosynthetic protein adenosine-3

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