SMTL ID : 4ew3.1 (1 other biounit)

The structure of human glycinamide ribonucleotide transformylase in complex with 10R-methylthio-DDATHF.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 8 residues within 4Å: Chain A: G.11, S.12, N.13, L.14, Q.15, A.16, K.45, H.174 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:N.13, A:L.14, A:Q.15, A:A.16 Water bridges: A:K.45, A:H.174, A:H.174, A:H.174 Salt bridges: A:K.45, A:H.174

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: K.157, R.168 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.157, A:R.168 SO4.3: 5 residues within 4Å: Chain A: N.119, A.120, H.121, E.122, V.162 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.119, A:H.121, A:E.122 Water bridges: A:N.119, A:A.120 Salt bridges: A:H.121

1 x DXZ: N-({4-[(1R)-4-(2,4-diamino-6-oxo-1,6-dihydropyrimidin-5-yl)-1-(methylsulfanyl)butyl]phenyl}carbonyl)-L-glutamic acid(Non-covalent)

DXZ.4: 13 residues within 4Å: Chain A: R.64, L.85, F.88, M.89, R.90, I.91, L.92, V.97, N.106, V.139, A.140, E.141, V.143 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:L.85, A:I.91 Hydrogen bonds: A:M.89, A:M.89, A:M.89, A:R.90, A:I.91, A:L.92, A:L.92, A:A.140, A:D.144 Water bridges: A:R.90, A:N.106, A:A.145 Salt bridges: A:R.64, A:R.90, A:R.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Connelly, S. et al., Biological and Structural Evaluation of 10R- and 10S-Methylthio-DDACTHF Reveals a New Role for Sulfur in Inhibition of Glycinamide Ribonucleotide Transformylase. Biochemistry (2013)

Release Date

2013-07-31

Peptides

Trifunctional purine biosynthetic protein adenosine-3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Trifunctional purine biosynthetic protein adenosine-3

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