SMTL ID : 4f70.1

Crystal structure of human CDK8/CYCC in complex with compound 4 (1-[3-tert-butyl-1-(4-methylphenyl)-1H-pyrazol-5-yl]-3-[2-(morpholin-4-yl)ethyl]urea)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 0ST: 1-[3-tert-butyl-1-(4-methylphenyl)-1H-pyrazol-5-yl]-3-[2-(morpholin-4-yl)ethyl]urea(Non-covalent)

0ST.1: 14 residues within 4Å: Chain A: V.37, K.54, S.64, R.67, E.68, L.72, L.75, I.81, F.99, H.151, I.173, A.174, D.175, M.176 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:E.68, A:L.72, A:L.75, A:I.81, A:I.173, A:D.175 Hydrogen bonds: A:K.54, A:K.54, A:E.68, A:D.175, A:D.175 pi-Cation interactions: A:Y.34

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain B: Y.41, Q.45, F.73, K.74, A.78 1 PLIP interactions: 1 interactions with chain B Water bridges: B:K.74

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schneider, E.V. et al., Structure-kinetic relationship study of CDK8/CycC specific compounds. Proc.Natl.Acad.Sci.USA (2013)

Release Date

2013-05-01

Peptides

Cyclin-dependent kinase 8: A
Cyclin-C: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cyclin-dependent kinase 8

Cyclin-C

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