SMTL ID : 4fal.1

Crystal structure of human 17beta-hydroxysteroid dehydrogenase type 5 in complex with 3-((3,4-dihydroisoquinolin-2(1H)-yl)sulfonyl)-N-methylbenzamide (80)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 30 residues within 4Å: Chain A: G.22, T.23, Y.24, D.50, Y.55, K.84, H.117, S.166, N.167, Q.190, Y.216, S.217, A.218, L.219, G.220, S.221, Q.222, L.236, A.253, L.268, A.269, K.270, S.271, Y.272, N.273, R.276, Q.279, N.280, F.306 Ligands: 0T0.2 28 PLIP interactions: 28 interactions with chain A Hydrophobic interactions: A:Y.216, A:Y.216, A:Y.216, A:F.306 Hydrogen bonds: A:T.23, A:Y.24, A:D.50, A:Y.55, A:S.166, A:N.167, A:Q.190, A:S.217, A:L.219, A:S.221, A:Q.222, A:Q.222, A:Q.222, A:K.270, A:Y.272, A:Q.279, A:N.280 Water bridges: A:S.217, A:A.218, A:A.218, A:Q.279 Salt bridges: A:K.270, A:R.276 pi-Cation interactions: A:R.276

1 x 0T0: 3-(3,4-dihydroisoquinolin-2(1H)-ylsulfonyl)-N-methylbenzamide(Non-covalent)

0T0.2: 15 residues within 4Å: Chain A: Y.24, L.54, Y.55, W.86, H.117, S.118, M.120, N.167, Y.216, W.227, F.306, F.311, Y.317, Y.319 Ligands: NAP.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.54, A:F.311, A:Y.317, A:Y.319 Hydrogen bonds: A:S.118 pi-Stacking: A:W.227

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 9 residues within 4Å: Chain A: Q.6, P.17, V.18, L.19, G.45, F.46, R.47, H.48, F.284 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Q.6, A:Q.6, A:V.18, A:L.19, A:G.45, A:R.47, A:H.48 EDO.4: 5 residues within 4Å: Chain A: L.103, K.104, Q.107, L.108, D.109 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Q.107 EDO.5: 5 residues within 4Å: Chain A: V.18, L.261, G.264, V.265, V.266 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.261

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jamieson, S.M. et al., 3-(3,4-Dihydroisoquinolin-2(1H)-ylsulfonyl)benzoic acids; a New Class of Highly Potent and Selective Inhibitors of the Type 5 17-beta-hydroxysteroid Dehydrogenase AKR1C3. J.Med.Chem. (2012)

Release Date

2012-10-10

Peptides

Aldo-keto reductase family 1 member C3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Aldo-keto reductase family 1 member C3

Related Entries With Identical Sequence