SMTL ID : 4xve.1

17beta-HSD5 in complex with 3-pentyl-2-[(pyridin-2-ylmethyl)sulfanyl]-7-(pyrrolidin-1-ylcarbonyl)quinazolin-4(3H)-one

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 30 residues within 4Å: Chain A: G.22, T.23, Y.24, D.50, Y.55, K.84, H.117, S.166, N.167, Q.190, Y.216, S.217, A.218, L.219, G.220, S.221, Q.222, L.236, A.253, L.268, A.269, K.270, S.271, Y.272, N.273, R.276, Q.279, N.280, F.306 Ligands: WDS.2 33 PLIP interactions: 33 interactions with chain A Hydrophobic interactions: A:F.306 Hydrogen bonds: A:T.23, A:Y.24, A:Y.24, A:D.50, A:D.50, A:S.166, A:N.167, A:Q.190, A:S.217, A:L.219, A:G.220, A:S.221, A:Q.222, A:Q.222, A:Q.222, A:K.270, A:S.271, A:Y.272, A:Q.279, A:N.280, A:N.280 Water bridges: A:S.217, A:A.218, A:A.218, A:T.251, A:K.270, A:K.270, A:R.276 Salt bridges: A:K.270, A:R.276 pi-Stacking: A:Y.216 pi-Cation interactions: A:R.276

1 x WDS: 3-pentyl-2-[(pyridin-2-ylmethyl)sulfanyl]-7-(pyrrolidin-1-ylcarbonyl)quinazolin-4(3H)-one(Non-covalent)

WDS.2: 19 residues within 4Å: Chain A: Y.24, L.54, W.86, S.118, M.120, L.122, S.129, V.137, F.139, N.167, R.226, W.227, F.306, S.310, F.311, Y.317, P.318, Y.319 Ligands: NAP.1 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:L.54, A:L.54, A:V.137, A:F.139, A:W.227, A:F.306, A:F.306, A:F.311, A:F.311, A:F.311, A:Y.317, A:P.318, A:Y.319 Water bridges: A:S.118 pi-Stacking: A:F.311

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Amano, Y. et al., Structures of complexes of type 5 17 beta-hydroxysteroid dehydrogenase with structurally diverse inhibitors: insights into the conformational changes upon inhibitor binding. Acta Crystallogr.,Sect.D (2015)

Release Date

2015-04-15

Peptides

Aldo-keto reductase family 1 member C3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Aldo-keto reductase family 1 member C3

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