SMTL ID : 4fw3.1 (3 other biounits)

Crystal Structure of the LpxC in complex with N-[(2S)-3-AMINO-1-(HYDROXYAMINO)-1-OXOPROPAN-2-YL]-4-(4-PHENYLBUTA-1,3-DIYN-1-YL)BENZAMIDE inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.81, H.240, D.244 Ligands: L52.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.81, A:H.240, A:D.244, A:D.244

1 x L52: N-[(2S)-3-amino-1-(hydroxyamino)-1-oxopropan-2-yl]-4-(4-phenylbuta-1,3-diyn-1-yl)benzamide(Non-covalent)

L52.2: 20 residues within 4Å: Chain A: H.22, M.65, E.80, H.81, T.193, F.194, G.195, M.197, L.203, R.204, A.209, G.212, S.213, V.214, A.217, V.219, H.240, D.244, H.267 Ligands: ZN.1 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:T.193, A:A.209, A:A.217 Hydrogen bonds: A:M.65, A:E.80, A:T.193, A:F.194, A:D.244 Water bridges: A:K.241

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 8 residues within 4Å: Chain A: A.87, F.155, I.246, L.249, Y.250, S.255, L.256, Y.299 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.87, A:I.246, A:L.256

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kang, Y.N. et al., Crystal Structure of the LpxC. to be published

Release Date

2013-05-15

Peptides

UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase

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