SMTL ID : 4fw4.3 (3 other biounits)

Crystal Structure of the LpxC in complex with N-[(1S,2R)-2-HYDROXY-1-(HYDROXYCARBAMOYL)PROPYL]-4-(4-PHENYLBUTA-1,3-DIYN-1-YL)BENZAMIDE inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.19 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.81, H.240, D.244 Ligands: 3P3.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.81, A:H.240, A:D.244, A:D.244

1 x 3P3: N-[(1S,2R)-2-hydroxy-1-(hydroxycarbamoyl)propyl]-4-(4-phenylbuta-1,3-diyn-1-yl)benzamide(Non-covalent)

3P3.2: 19 residues within 4Å: Chain A: L.21, M.65, E.80, H.81, T.193, F.194, M.197, I.200, L.203, R.204, A.209, G.212, S.213, A.217, H.240, K.241, D.244, H.267 Ligands: ZN.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.21, A:L.21, A:T.193, A:I.200, A:L.203, A:A.209, A:A.217 Hydrogen bonds: A:M.65, A:T.193, A:F.194, A:F.194

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 8 residues within 4Å: Chain A: A.87, F.155, I.246, L.249, Y.250, S.255, L.256, Y.299 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.246, A:N.254, A:L.256, A:Y.299, A:Y.299

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 5 residues within 4Å: Chain A: K.32, S.43, E.52, Y.95, E.97 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.95 Hydrogen bonds: A:S.43, A:E.52, A:E.97 Salt bridges: A:K.32

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kang, Y.N. et al., Crystal Structure of the LpxC. to be published

Release Date

2013-05-15

Peptides

UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase

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