SMTL ID : 4fw5.1 (3 other biounits)

Crystal Structure of the LpxC in complex with 4'-BROMO-N-[(2S,3R)-3-HYDROXY-1-(HYDROXYAMINO)-1-OXOBUTAN-2-YL]BIPHENYL-4-CARBOXAMIDE inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.99 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.81, T.193, H.240, D.244 Ligands: L58.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.81, A:H.240, A:D.244, A:D.244

1 x L58: 4'-bromo-N-[(2S,3R)-3-hydroxy-1-(hydroxyamino)-1-oxobutan-2-yl]biphenyl-4-carboxamide(Non-covalent)

L58.2: 20 residues within 4Å: Chain A: H.22, M.65, S.66, E.80, H.81, T.193, F.194, I.200, L.203, R.204, A.209, G.212, S.213, A.217, V.219, H.240, K.241, D.244, H.267 Ligands: ZN.1 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.194, A:I.200, A:I.200, A:I.200, A:L.203, A:A.209, A:A.217, A:V.219 Hydrogen bonds: A:M.65, A:E.80, A:T.193, A:T.193, A:K.241 Halogen bonds: A:R.204

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 4 residues within 4Å: Chain A: R.146, R.261, G.262, F.263 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:R.261 Hydrogen bonds: A:R.261 Water bridges: A:R.146 Salt bridges: A:R.146

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 8 residues within 4Å: Chain A: A.87, F.155, I.246, L.249, Y.250, S.255, L.256, Y.299 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.246, A:N.254, A:L.256, A:Y.299

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kang, Y.N. et al., Crystal Structure of the LpxC. to be published

Release Date

2013-05-15

Peptides

UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase

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