SMTL ID : 4fw7.1 (3 other biounits)

Crystal Structure of the LpxC in complex with N-[(2S,3R)-3-HYDROXY-1-(HYDROXYAMINO)-1-OXOBUTAN-2-YL]BIPHENYL-4-CARBOXAMIDE inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.81, T.193, H.240, D.244 Ligands: L63.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.81, A:H.240, A:D.244, A:D.244

1 x L63: N-[(2S,3R)-3-hydroxy-1-(hydroxyamino)-1-oxobutan-2-yl]biphenyl-4-carboxamide(Non-covalent)

L63.2: 21 residues within 4Å: Chain A: M.65, S.66, E.80, H.81, T.193, F.194, I.200, L.203, R.204, A.209, G.212, S.213, A.217, V.219, H.240, K.241, D.244, H.267 Ligands: ZN.1, GOL.4, ACT.7 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:F.194, A:I.200, A:I.200, A:I.200, A:L.203, A:A.209, A:A.217, A:V.219 Hydrogen bonds: A:M.65, A:T.193, A:T.193, A:K.241, A:K.241, A:D.244 Water bridges: A:M.65

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: A.87, F.155, I.246, L.249, Y.250, S.255, L.256 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.246, A:N.254, A:L.256 Water bridges: A:Y.299 GOL.4: 5 residues within 4Å: Chain A: F.194, G.195, F.196, D.199 Ligands: L63.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.196 GOL.5: 5 residues within 4Å: Chain A: S.43, V.50, E.52, Y.95, E.97 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.43, A:E.52 GOL.6: 2 residues within 4Å: Chain A: E.141, G.143 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.141 Water bridges: A:E.141

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.7: 5 residues within 4Å: Chain A: M.197, R.204, V.214, V.219 Ligands: L63.2 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.214, A:V.219 Water bridges: A:V.214 Salt bridges: A:R.204 ACT.8: 2 residues within 4Å: Chain A: D.221, R.224 2 PLIP interactions: 2 interactions with chain A Water bridges: A:D.221 Salt bridges: A:R.224

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kang, Y.N. et al., Crystal Structure of the LpxC. to be published

Release Date

2013-05-15

Peptides

UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase

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