SMTL ID : 4gcj.1

CDK2 in complex with inhibitor RC-3-89

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.42 Å

Oligo State

monomer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: H.68, P.69, I.71, E.89, K.150 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.73, A:E.89, A:K.150 Water bridges: A:H.68, A:H.68 EDO.2: 5 residues within 4Å: Chain A: R.44, V.162, P.163, V.164, R.165 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.44, A:R.165 Water bridges: A:R.44, A:R.44 EDO.3: 7 residues within 4Å: Chain A: K.96, M.99, D.100, E.203, R.207, R.208 Ligands: EDO.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.96, A:D.100, A:E.203 EDO.4: 7 residues within 4Å: Chain A: K.96, P.138, Q.139, W.175, Y.176, E.203 Ligands: EDO.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.96, A:Y.176 Water bridges: A:Q.139

1 x X64: 4-{[4-amino-5-(2-nitrobenzoyl)-1,3-thiazol-2-yl]amino}benzenesulfonamide(Non-covalent)

X64.5: 18 residues within 4Å: Chain A: I.18, V.26, A.39, K.41, V.72, F.88, E.89, F.90, L.91, H.92, Q.93, D.94, K.97, Q.139, N.140, L.142, A.152, D.153 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.18, A:V.26, A:F.90, A:D.94, A:A.152, A:D.153 Hydrogen bonds: A:E.89, A:L.91, A:L.91, A:D.94, A:D.94, A:K.97 Water bridges: A:K.97

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schonbrunn, E. et al., Development of highly potent and selective diaminothiazole inhibitors of cyclin-dependent kinases. J.Med.Chem. (2013)

Release Date

2012-10-31

Peptides

Cyclin-dependent kinase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cyclin-dependent kinase 2

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