SMTL ID : 4gix.1

Crystal structure of human GLTP bound with 12:0 disulfatide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x 0SG: N-{(2S,3R,4E)-1-[(3,6-di-O-sulfo-beta-D-galactopyranosyl)oxy]-3-hydroxyoctadec-4-en-2-yl}dodecanamide(Non-covalent)

0SG.1: 27 residues within 4Å: Chain A: F.34, F.42, I.45, D.48, G.51, N.52, K.55, K.87, L.92, A.93, W.96, F.103, L.136, H.140, I.147, F.148, L.152, Y.207 Chain B: V.41, P.44, I.45, Y.132, H.140, I.147, F.148, A.151 Ligands: 0SG.2 28 PLIP interactions: 8 interactions with chain B, 20 interactions with chain A Hydrophobic interactions: B:P.44, B:I.45, B:I.45, B:Y.132, B:I.147, B:F.148, B:F.148, B:A.151, A:F.34, A:F.42, A:I.45, A:F.103, A:F.103, A:F.103, A:F.103, A:L.136, A:L.136, A:I.147, A:F.148, A:L.152 Hydrogen bonds: A:D.48, A:D.48, A:N.52 Water bridges: A:N.52, A:N.52, A:K.87, A:A.93 Salt bridges: A:K.87 0SG.2: 27 residues within 4Å: Chain A: V.41, P.44, I.45, Y.132, H.140, I.147, F.148, A.151 Chain B: F.34, F.42, I.45, D.48, G.51, N.52, K.55, K.87, L.92, A.93, W.96, F.103, L.136, H.140, I.147, F.148, L.152, Y.207 Ligands: 0SG.1 30 PLIP interactions: 22 interactions with chain B, 8 interactions with chain A Hydrophobic interactions: B:F.34, B:F.42, B:I.45, B:F.103, B:F.103, B:F.103, B:F.103, B:L.136, B:L.136, B:I.147, B:F.148, B:L.152, A:P.44, A:I.45, A:I.45, A:Y.132, A:I.147, A:F.148, A:F.148, A:A.151 Hydrogen bonds: B:D.48, B:D.48, B:N.52, B:Y.207 Water bridges: B:D.48, B:N.52, B:N.52, B:K.87, B:A.93 Salt bridges: B:K.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Samygina, V.R. et al., Structural insights into lipid-dependent reversible dimerization of human GLTP. Acta Crystallogr.,Sect.D (2013)

Release Date

2013-04-10

Peptides

Glycolipid transfer protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Glycolipid transfer protein

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