SMTL ID : 4gmb.1

Crystal structure of human WD repeat domain 5 with compound MM-402

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.78 Å

Oligo State

monomer

Ligands

1 x ALQ- 0XQ- ARG- ABA- PG9: MM-402(Non-covalent)

ALQ-0XQ-ARG-ABA-PG9.1: 16 residues within 4Å: Chain A: A.26, S.28, A.44, G.68, I.69, S.70, D.71, D.86, Y.110, F.112, F.128, Y.239, C.240, F.242, I.284, L.300 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:A.26, A:Y.110, A:Y.110, A:F.112, A:F.112, A:F.128, A:F.128, A:Y.239, A:Y.239, A:I.284, A:L.300 Hydrogen bonds: A:S.70, A:S.70, A:D.86, A:C.240 Water bridges: A:S.154, A:C.240 Salt bridges: A:D.71 pi-Cation interactions: A:K.238

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Karatas, H. et al., Discovery of a Highly Potent, Cell-Permeable Macrocyclic Peptidomimetic (MM-589) Targeting the WD Repeat Domain 5 Protein (WDR5)-Mixed Lineage Leukemia (MLL) Protein-Protein Interaction. J.Med.Chem. (2017)

Release Date

2014-02-19

Peptides

WD repeat-containing protein 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

WD repeat-containing protein 5

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