SMTL ID : 4h2z.1

Crystal structure of human GLTP bound with 12:0 monosulfatide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

homo-dimer

Ligands

2 x EIS: N-{(2S,3R,4E)-3-hydroxy-1-[(3-O-sulfo-beta-D-galactopyranosyl)oxy]octadec-4-en-2-yl}dodecanamide(Non-covalent)

EIS.1: 25 residues within 4Å: Chain A: F.42, I.45, D.48, G.51, N.52, K.55, L.92, A.93, W.96, F.103, L.136, H.140, I.147, F.148, A.151, Y.207 Chain B: V.41, P.44, I.45, H.140, I.147, F.148, A.151 Ligands: MYS.2, EIS.5 18 PLIP interactions: 14 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:F.42, A:I.45, A:F.103, A:F.103, A:F.103, A:L.136, A:I.147, A:F.148, A:F.148, A:A.151, B:P.44, B:I.147, B:F.148, B:A.151 Hydrogen bonds: A:D.48, A:D.48, A:N.52 Water bridges: A:A.93 EIS.5: 25 residues within 4Å: Chain A: V.41, P.44, I.45, H.140, I.147, F.148, A.151 Chain B: F.42, I.45, D.48, G.51, N.52, K.55, L.92, A.93, W.96, F.103, L.136, H.140, I.147, F.148, A.151, Y.207 Ligands: EIS.1, MYS.6 20 PLIP interactions: 16 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:F.42, B:I.45, B:F.103, B:F.103, B:F.103, B:L.136, B:I.147, B:F.148, B:F.148, B:A.151, A:P.44, A:I.147, A:F.148, A:A.151 Hydrogen bonds: B:D.48, B:D.48, B:N.52, B:Y.207 Water bridges: B:D.48, B:A.93

4 x MYS: PENTADECANE(Non-covalent)

MYS.2: 11 residues within 4Å: Chain A: L.30, F.33, L.37, F.103, I.104, F.107, L.108, A.128, L.152, F.183 Ligands: EIS.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.30, A:F.33, A:F.33, A:F.33, A:L.37, A:I.104, A:L.108, A:A.128, A:L.152, A:F.183 MYS.3: 4 residues within 4Å: Chain A: K.87, L.205, N.206, Y.207 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:K.87, A:L.205, A:L.205, A:L.205, A:N.206, A:Y.207 MYS.6: 11 residues within 4Å: Chain B: L.30, F.33, L.37, F.103, I.104, F.107, L.108, A.128, L.152, F.183 Ligands: EIS.5 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:L.30, B:F.33, B:F.33, B:F.33, B:L.37, B:I.104, B:L.108, B:A.128, B:L.152, B:F.183 MYS.7: 4 residues within 4Å: Chain B: K.87, L.205, N.206, Y.207 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:K.87, B:L.205, B:L.205, B:L.205, B:N.206, B:Y.207

2 x NA: SODIUM ION(Non-functional Binders)

NA.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) NA.8: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Samygina, V.R. et al., Structural insights into lipid-dependent reversible dimerization of human GLTP. Acta Crystallogr.,Sect.D (2013)

Release Date

2013-04-10

Peptides

Glycolipid transfer protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Glycolipid transfer protein

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