SMTL ID : 4hc4.1

Human HMT1 hnRNP methyltransferase-like protein 6 (S. cerevisiae)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.97 Å

Oligo State

homo-dimer

Ligands

2 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 19 residues within 4Å: Chain A: H.58, M.61, R.67, G.91, A.92, G.93, I.96, L.97, E.113, A.114, S.115, I.117, G.139, P.140, V.141, E.142, E.156, M.167, S.170 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:H.58, A:G.91, A:G.93, A:A.114, A:S.115, A:S.115, A:V.141, A:E.142, A:S.170 Water bridges: A:G.95, A:S.115, A:R.352 Salt bridges: A:R.67 SAH.4: 19 residues within 4Å: Chain B: H.58, M.61, R.67, G.91, A.92, G.93, I.96, L.97, E.113, A.114, S.115, I.117, G.139, P.140, V.141, E.142, E.156, M.167, S.170 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:H.58, B:G.91, B:G.93, B:A.114, B:S.115, B:S.115, B:V.141, B:E.142, B:S.170 Water bridges: B:G.95, B:S.115, B:R.352 Salt bridges: B:R.67

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: R.253, F.254, A.255, Q.256 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.253, A:F.254 EDO.5: 4 residues within 4Å: Chain B: R.253, F.254, A.255, Q.256 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.253, B:F.254

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: E.341, T.343, L.357, L.358, R.359 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.343, A:T.343, A:L.357, A:R.359 GOL.6: 5 residues within 4Å: Chain B: E.341, T.343, L.357, L.358, R.359 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.343, B:T.343, B:L.357, B:R.359

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, H. et al., Structural basis of arginine asymmetrical dimethylation by PRMT6. Biochem. J. (2016)

Release Date

2012-10-17

Peptides

Protein arginine N-methyltransferase 6: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Protein arginine N-methyltransferase 6

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