- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x MN: MANGANESE (II) ION(Non-covalent)
- 3 x BEN: BENZAMIDINE(Non-functional Binders)
BEN.3: 3 residues within 4Å:- Chain A: N.60, N.61, L.62
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.60
BEN.8: 3 residues within 4Å:- Chain B: N.60, N.61, L.62
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.60
BEN.13: 3 residues within 4Å:- Chain C: N.60, N.61, L.62
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:N.60
- 3 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
BME.4: 7 residues within 4Å:- Chain A: H.1, V.3, L.38, G.39, C.40, H.261, F.300
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:F.300
BME.9: 6 residues within 4Å:- Chain B: H.1, V.3, L.38, G.39, C.40, F.300
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:F.300
BME.14: 5 residues within 4Å:- Chain C: H.1, V.3, L.38, C.40, F.300
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:F.300
- 3 x XA1: {(5R)-5-amino-5-carboxy-5-[1-(4-chlorobenzyl)piperidin-4-yl]pentyl}(trihydroxy)borate(1-)(Non-covalent)
XA1.5: 15 residues within 4Å:- Chain A: H.97, D.120, H.122, D.124, N.126, S.132, S.133, H.137, G.138, D.179, D.228, D.230, E.273
- Ligands: MN.1, MN.2
11 PLIP interactions:11 interactions with chain A- Hydrogen bonds: A:N.126, A:S.133, A:H.137, A:D.179
- Water bridges: A:T.131, A:S.133, A:S.133, A:N.135, A:G.138, A:D.179
- Salt bridges: A:D.179
XA1.10: 16 residues within 4Å:- Chain B: H.97, D.120, H.122, D.124, N.126, S.132, S.133, H.137, G.138, D.179, D.228, D.230, T.242, E.273
- Ligands: MN.6, MN.7
14 PLIP interactions:14 interactions with chain B- Hydrogen bonds: B:N.126, B:S.133, B:D.179, B:T.242, B:E.273
- Water bridges: B:D.124, B:S.133, B:S.133, B:N.135, B:G.138, B:G.138, B:D.179, B:E.273
- Salt bridges: B:D.179
XA1.15: 16 residues within 4Å:- Chain C: H.97, D.120, H.122, D.124, N.126, S.132, S.133, H.137, G.138, D.179, D.228, D.230, T.242, E.273
- Ligands: MN.11, MN.12
12 PLIP interactions:12 interactions with chain C- Hydrogen bonds: C:N.126, C:S.133, C:D.179, C:E.273
- Water bridges: C:T.131, C:T.131, C:S.133, C:S.133, C:S.133, C:N.135, C:D.179
- Salt bridges: C:D.179
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Golebiowski, A. et al., Synthesis of quaternary alpha-amino acid-based arginase inhibitors via the Ugi reaction. Bioorg.Med.Chem.Lett. (2013)
- Release Date
- 2013-12-11
- Peptides
- Arginase-2, mitochondrial: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x MN: MANGANESE (II) ION(Non-covalent)
- 3 x BEN: BENZAMIDINE(Non-functional Binders)
- 3 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
- 3 x XA1: {(5R)-5-amino-5-carboxy-5-[1-(4-chlorobenzyl)piperidin-4-yl]pentyl}(trihydroxy)borate(1-)(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Golebiowski, A. et al., Synthesis of quaternary alpha-amino acid-based arginase inhibitors via the Ugi reaction. Bioorg.Med.Chem.Lett. (2013)
- Release Date
- 2013-12-11
- Peptides
- Arginase-2, mitochondrial: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C