SMTL ID : 4j0t.1

CRYSTAL STRUCTURE OF BACE-1 IN COMPLEX WITH 5-Ethoxy-pyridine-2-carboxylic acid [3-((R)-2-amino-5,5-difluoro-4-methyl-5,6-dihydro-4H-[1,3]oxazin-4-yl)-4-fluoro-phenyl]-amide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

monomer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 2 residues within 4Å: Chain A: H.197, Y.200 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.200 NA.2: 3 residues within 4Å: Chain A: V.157, K.158, T.160 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.160

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 6 residues within 4Å: Chain A: R.112, A.113, N.114, E.150, S.155, Q.159 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.114, A:E.150, A:S.155 Water bridges: A:N.114 Salt bridges: A:E.150

1 x 6T9: 5-Ethoxy-pyridine-2-carboxylic acid [3-((R)-2-amino-5,5-difluoro-4-methyl-5,6-dihydro-4H-[1,3]oxazin-4-yl)-4-fluoro-phenyl]-amide(Non-covalent)

6T9.4: 19 residues within 4Å: Chain A: G.27, Q.28, G.29, L.46, D.48, G.50, Y.87, F.124, I.126, W.131, I.134, D.244, S.245, G.246, T.247, T.248, R.323, A.351, E.355 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.87, A:F.124, A:A.351 Hydrogen bonds: A:D.244, A:G.246

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hilpert, H. et al., beta-Secretase (BACE1) Inhibitors with High In Vivo Efficacy Suitable for Clinical Evaluation in Alzheimer s Disease. J.Med.Chem. (2013)

Release Date

2013-05-01

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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