SMTL ID : 4jma.1

Crystal structure of Cytochrome C Peroxidase W191G-Gateless in complex with 3-Fluorocatechol

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 22 residues within 4Å: Chain A: P.41, V.42, R.45, W.48, P.142, D.143, A.144, F.155, L.168, M.169, A.171, H.172, L.174, G.175, K.176, T.177, H.178, N.181, S.182, L.227, T.229 Ligands: 3FA.2 25 PLIP interactions: 24 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:R.45, A:W.48, A:W.48, A:W.48, A:P.142, A:A.144, A:F.155, A:L.168, A:A.171, A:T.177, A:L.227 Hydrogen bonds: A:K.176, A:H.178, A:N.181, A:S.182 Water bridges: A:R.45, A:R.45, A:H.178 Salt bridges: A:R.45, A:H.178, A:H.178 pi-Stacking: A:W.48 pi-Cation interactions: A:R.45 Metal complexes: A:H.172, H2O.6

2 x 3FA: 3-FLUOROBENZENE-1,2-DIOL(Non-covalent)

3FA.2: 12 residues within 4Å: Chain A: H.172, L.174, G.175, K.176, T.177, G.187, G.188, M.225, M.226, L.227, D.230 Ligands: HEM.1 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:H.172, A:T.177 Hydrogen bonds: A:M.225, A:L.227 Water bridges: A:H.172, A:G.188, A:M.225, A:M.225 Halogen bonds: A:G.175 3FA.3: 7 residues within 4Å: Chain A: F.86, L.89, E.90, H.93, S.101, L.104, F.105 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.86, A:F.86, A:L.89, A:E.90, A:H.93, A:L.104, A:F.105 Hydrogen bonds: A:S.101 Water bridges: A:H.93, A:S.101 Halogen bonds: A:S.101

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rocklin, G.J. et al., Blind prediction of charged ligand binding affinities in a model binding site. J.Mol.Biol. (2013)

Release Date

2013-05-01

Peptides

Cytochrome c peroxidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytochrome c peroxidase

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