SMTL ID : 5u5v.1

CcP gateless cavity

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.22 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 24 residues within 4Å: Chain A: P.41, V.42, R.45, W.48, P.142, D.143, A.144, F.155, L.168, M.169, A.171, H.172, L.174, G.175, K.176, T.177, H.178, N.181, S.182, L.227, T.229, F.261 Ligands: 7WA.2, MES.3 27 PLIP interactions: 26 interactions with chain A, 1 Ligand-Water interactions, Hydrophobic interactions: A:R.45, A:W.48, A:W.48, A:W.48, A:P.142, A:A.144, A:F.155, A:L.168, A:A.171, A:T.177, A:L.227, A:F.261 Hydrogen bonds: A:K.176, A:H.178, A:N.181 Water bridges: A:Y.33, A:R.45, A:A.80, A:G.81, A:H.178 Salt bridges: A:R.45, A:H.178, A:H.178 pi-Stacking: A:W.48 pi-Cation interactions: A:R.45 Metal complexes: A:H.172, H2O.1

1 x 7WA: 1H-benzimidazol-4-amine(Non-covalent)

7WA.2: 11 residues within 4Å: Chain A: H.172, L.174, G.175, K.176, T.177, M.225, M.226, L.227, D.230 Ligands: HEM.1, MES.3 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:H.172, A:T.177, A:L.227 Hydrogen bonds: A:L.174, A:D.230 Water bridges: A:M.225, A:M.225 pi-Stacking: A:H.172

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.3: 12 residues within 4Å: Chain A: H.172, L.174, G.175, K.176, T.177, G.188, N.200, Y.224, M.225, M.226 Ligands: HEM.1, 7WA.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.200, A:M.225 Water bridges: A:T.177

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Balius, T.E. et al., Testing inhomogeneous solvation theory in structure-based ligand discovery. Proc. Natl. Acad. Sci. U.S.A. (2017)

Release Date

2017-02-01

Peptides

Peroxidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peroxidase

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