SMTL ID : 4xv4.1

CcP gateless cavity

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.69 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 22 residues within 4Å: Chain A: P.41, V.42, R.45, W.48, P.142, D.143, A.144, F.155, L.168, M.169, A.171, H.172, L.174, G.175, K.176, T.177, H.178, N.181, S.182, L.227, T.229 Ligands: 25T.2 27 PLIP interactions: 26 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:R.45, A:W.48, A:W.48, A:W.48, A:P.142, A:A.144, A:F.155, A:L.168, A:A.171, A:T.177 Hydrogen bonds: A:K.176, A:H.178, A:N.181, A:S.182 Water bridges: A:D.34, A:D.34, A:D.34, A:R.45, A:A.80, A:H.178 Salt bridges: A:R.45, A:H.178, A:H.178 pi-Stacking: A:W.48 pi-Cation interactions: A:R.45 Metal complexes: A:H.172, H2O.4

2 x 25T: 2-AMINO-5-METHYLTHIAZOLE(Non-covalent)

25T.2: 10 residues within 4Å: Chain A: H.172, L.174, G.175, K.176, T.177, G.187, M.225, L.227, D.230 Ligands: HEM.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:T.177, A:L.227 Hydrogen bonds: A:G.175 25T.3: 8 residues within 4Å: Chain A: R.69, F.86, L.89, E.90, H.93, S.101, L.104, F.105 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.86, A:L.89, A:L.104 Hydrogen bonds: A:S.101 Water bridges: A:H.93 pi-Stacking: A:H.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fischer, M. et al., One Crystal, Two Temperatures: Cryocooling Penalties Alter Ligand Binding to Transient Protein Sites. Chembiochem (2015)

Release Date

2015-02-18

Peptides

Cytochrome c peroxidase, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytochrome c peroxidase, mitochondrial

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