SMTL ID : 5u5u.1

CcP gateless cavity

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.33 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 28 residues within 4Å: Chain A: P.41, V.42, V.44, R.45, W.48, P.142, D.143, A.144, V.151, F.155, L.168, M.169, A.171, H.172, L.174, G.175, K.176, T.177, H.178, N.181, S.182, Y.184, L.227, T.229, F.257, F.261, L.264 Ligands: NTN.2 25 PLIP interactions: 24 interactions with chain A, 1 Ligand-Water interactions, Hydrophobic interactions: A:R.45, A:W.48, A:W.48, A:W.48, A:P.142, A:A.144, A:F.155, A:L.168, A:A.171, A:T.177 Hydrogen bonds: A:K.176, A:H.178, A:N.181, A:S.182, A:S.182 Water bridges: A:H.178, A:H.178, A:H.178 Salt bridges: A:R.45, A:H.178, A:H.178 pi-Stacking: A:W.48 pi-Cation interactions: A:R.45 Metal complexes: A:H.172, H2O.1

1 x NTN: ISONICOTINAMIDINE(Non-covalent)

NTN.2: 11 residues within 4Å: Chain A: H.172, L.174, G.175, K.176, T.177, F.197, M.225, M.226, L.227, D.230 Ligands: HEM.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:H.172, A:T.177 Hydrogen bonds: A:M.225, A:D.230 Water bridges: A:M.225 pi-Stacking: A:H.172

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Balius, T.E. et al., Testing inhomogeneous solvation theory in structure-based ligand discovery. Proc. Natl. Acad. Sci. U.S.A. (2017)

Release Date

2017-02-01

Peptides

Peroxidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peroxidase

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