SMTL ID : 4kqo.2 (1 other biounit)

Crystal structure of penicillin-binding protein 3 from pseudomonas aeruginosa in complex with piperacillin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.31 Å

Oligo State

monomer

Ligands

1 x JPP: Piperacillin (Open Form)(Covalent)

JPP.1: 18 residues within 4Å: Chain A: G.278, S.279, Y.313, V.318, S.334, N.336, Y.392, Y.394, K.469, S.470, G.471, T.472, A.473, R.474, Y.483, Y.488, F.518, G.519 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:T.472, A:Y.483, A:Y.488, A:F.518 Hydrogen bonds: A:S.279, A:S.334, A:S.334, A:S.334, A:N.336, A:Y.394, A:T.472, A:T.472, A:R.474, A:G.519 Water bridges: A:K.469, A:S.470, A:G.520, A:G.520 Salt bridges: A:K.469

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: G.232, S.233, R.269, D.273, F.275, V.508, D.510 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.232, A:S.233, A:R.269, A:R.269, A:R.489

1 x IMD: IMIDAZOLE(Non-covalent)

IMD.3: 4 residues within 4Å: Chain A: R.211, R.536, L.537, N.539 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.539

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 3 residues within 4Å: Chain A: K.475, V.476, R.489 Ligand excluded by PLIP CL.5: 5 residues within 4Å: Chain A: R.137, N.256, N.257, R.258, R.259 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

van Berkel, S.S. et al., Binding of (5S)-Penicilloic Acid to Penicillin Binding Protein 3. Acs Chem.Biol. (2013)

Release Date

2013-11-06

Peptides

Penicillin-binding protein 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Penicillin-binding protein 3

Related Entries With Identical Sequence