SMTL ID : 5df9.1

CRYSTAL STRUCTURE OF PENICILLIN-BINDING PROTEIN 3 IN COMPLEX WITH DEACYLATED PRODUCT OF CEFOPERAZONE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.372, V.373, G.374 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.373, A:G.374 Salt bridges: A:R.372 SO4.2: 2 residues within 4Å: Chain A: K.475, R.484 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.484 Salt bridges: A:K.230, A:K.475

1 x 59J: (2R,5R)-2-[(R)-carboxy{[(2R)-2-{[(4-ethyl-2,3-dioxopiperazin-1-yl)carbonyl]amino}-2-(4-hydroxyphenyl)acetyl]amino}methyl]-5-methyl-5,6-dihydro-2H-1,3-thiazine-4-carboxylic acid(Non-covalent)

59J.3: 18 residues within 4Å: Chain A: S.279, V.318, S.334, N.336, T.389, Y.392, Y.394, S.470, G.471, T.472, A.473, R.474, Y.483, Y.488, Y.517, F.518, G.519, G.520 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:T.389, A:T.472, A:Y.488, A:Y.517 Hydrogen bonds: A:S.279, A:S.279, A:S.334, A:N.336, A:Y.392, A:Y.394, A:S.470, A:S.470, A:T.472, A:T.472, A:R.474, A:G.519, A:G.520 Salt bridges: A:K.282, A:K.469

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 8 residues within 4Å: Chain A: A.231, G.232, S.233, R.269, D.273, F.275, V.508, D.510 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.232, A:R.269, A:D.273, A:R.489

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ren, J. et al., Crystal structures of penicillin-binding protein 3 in complexes with azlocillin and cefoperazone in both acylated and deacylated forms. Febs Lett. (2016)

Release Date

2016-01-13

Peptides

Cell division protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cell division protein

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