SMTL ID : 5df7.2 (1 other biounit)

CRYSTAL STRUCTURE OF PENICILLIN-BINDING PROTEIN 3 FROM PSEUDOMONAS AERUGINOSA IN COMPLEX WITH AZLOCILLIN

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x 59H: (2R,4S)-5,5-dimethyl-2-[(1R)-2-oxo-1-{[(2R)-2-{[(2-oxoimidazolidin-1-yl)carbonyl]amino}-2-phenylacetyl]amino}ethyl]-1,3-thiazolidine-4-carboxylic acid(Covalent)

59H.1: 16 residues within 4Å: Chain A: G.278, S.279, Y.313, V.318, S.334, N.336, Y.394, S.470, G.471, T.472, A.473, R.474, Y.483, Y.488, F.518, G.519 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:Y.488, A:F.518 Hydrogen bonds: A:S.279, A:Y.313, A:Y.313, A:S.334, A:N.336, A:Y.394, A:T.472, A:T.472, A:R.474, A:G.519 Water bridges: A:S.470, A:G.520 Salt bridges: A:K.469

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: G.232, S.233, R.269, F.275, A.400, R.489, V.508, D.510 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.233, A:S.233, A:R.269, A:R.489, A:D.510 GOL.3: 5 residues within 4Å: Chain A: Y.253, N.254, N.257, R.258, L.261 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.254, A:N.254 Water bridges: A:T.252

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 2 residues within 4Å: Chain A: F.457, R.458 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: K.475, V.476, R.489 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain A: F.152, R.160 Ligand excluded by PLIP

1 x IMD: IMIDAZOLE(Non-covalent)

IMD.7: 3 residues within 4Å: Chain A: A.166, F.167, L.366 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.166 pi-Stacking: A:F.167

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ren, J. et al., Crystal structures of penicillin-binding protein 3 in complexes with azlocillin and cefoperazone in both acylated and deacylated forms. Febs Lett. (2016)

Release Date

2016-01-13

Peptides

Cell division protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Cell division protein

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